Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62620 953 / 0 Galactosyltransferase family protein (.1.2) AT1G74800 912 / 0 Galactosyltransferase family protein (.1) AT1G27120 795 / 0 Galactosyltransferase family protein (.1) AT4G21060 680 / 0 Galactosyltransferase family protein (.1.2) AT1G26810 334 / 2e-105 GALT1 galactosyltransferase1 (.1) AT3G06440 313 / 7e-98 Galactosyltransferase family protein (.1.2) AT3G14960 70 / 1e-12 Galactosyltransferase family protein (.1) AT1G53290 70 / 2e-12 Galactosyltransferase family protein (.1) AT2G26100 64 / 1e-10 Galactosyltransferase family protein (.1) AT1G05170 57 / 3e-08 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042164 [exp] 1314 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 848 / 0 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036686 [exp] 728 / 0 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 715 / 0 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10012822 [exp] 343 / 4e-109 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10030467 [exp] 342 / 4e-109 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 330 / 4e-104 AT1G26810 831 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 323 / 1e-102 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10032650 [exp] 322 / 7e-101 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G067600 [exp] 1017 / 0 AT5G62620 920 / 0.0 Galactosyltransferase family protein (.1.2) Potri.012G072400 [exp] 991 / 0 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 844 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 719 / 0 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 719 / 0 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G151600 [exp] 348 / 1e-110 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 347 / 2e-110 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 330 / 3e-104 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.001G392700 [exp] 72 / 4e-13 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 67 / 8e-12 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase CL0004 [flax] [poplar] Concanavalin PF00337 [flax] [poplar] Gal-bind_lectin Galactoside-binding lectin
Representative CDS sequence Show only first row Show all	>Lus10004256 pacid=23177828 polypeptide=Lus10004256 locus=Lus10004256.g ID=Lus10004256.BGIv1.0 annot-version=v1.0 ATGAAGAGGGGAAAATCGGACACCAGATTGGACAAATTCGGCGCCGTCACCCGGCAGCGATCTCTCCACATCCTAATCGCCTTAGGTCTTCTCTATTTCC TCTTCATTACAGTCGAAATCCCTCTCCTCTTCAACTCCGCAACCCCTACTTCTTCCTCCTCCTCCTCATCCTCGGTCTCTTCCGACTACATTACTTACCC TTCCAAGCTTCAGAGCGAGCAGGATTTCCAGGAACAGGACGCGCCATCTCGTCCTGCTTCATGGGTGTCCGAATCCAGCCCGACTCAGACCACTCCTCCC AAGAGGATCGTGTCTGGGTTGAAGTTCGACCCGGAGACTTTCGACCCGACTAAGAAGGACAGGTCCGTTGAGCTCCACAAGAGCGCCAAGACTGCTTGGG AGGTTGGGAGGAAGATGTGGGATGAGATTGAGAGGGACGAGTTCAAGTTCCTGGACCTTGATAAGAAGAAGCAGTCGGAGAAGAATCGGTCGTCCGAGTC GTCGTGCCCGAATTCGGTTTCGTTGACTGGGTCCGAGTTTTTGAAGCGGGGCAGACTTGTGGAGCTACCTTGCGGGCTTACGCTCGGATCGCATATTACG GTGGTGGGGAAGCCGAGGGCTGCTCATGCTGAAGATGTGCCGTATATATCTCTGATTAAGAAGGGCAAGCCTCGGGTTATGGTGTCGCAGTTTATGATGG AGTTGCAGGGGTTGAAGATCGTGGATGGTGAGGATCCGCCGAGGGTTCTCCATTTCAACCCGAGGTTGAAAGGGGATTGGAGTAGTAGGCCTGTTATTGA GCAGAATACTTGTTACAGGATGCAGTGGGGAACTGGTGTCCGTTGTGAAGGGTGGAAATCTAAGGCTGATGAAGAGACAGTTGATGGTCAGGTGAAGTGT GAGAAGTGGATCCGTGATGATGACAATCGCTCGGAGGAATCAAAGGCAAACTGGTGGCTAAGCCGGTTGATTGGTCGAACAAAAAAAGTGACATTTGACT GGCCATTCCCATTTGTGGAGGAGAAGATGTTTGTTTTAACTTTAACTGCTGGTTTGGAGGGTTATCATGTTAACGTTGATGGGAGGCATGTAACGTCTTT TCCATATCGAACTGGATTTACACTTGAGGATGCGACAGGGCTAACTGTGTATGGAGATGTTGATGTCCATTCTGTATTTGCTGCATCGTTGCCAGCAACT CACCCTAGCTTTGCTCCTCAGAGGCATCTGGAGAAGTCCATTGTGTGGAGAGCACCAGCACTTCCAGAAGGCCCTGTCGAACTCTTTATCGGCATTCTTT CAGCAGGTAACCATTTTGCCGAGAGGATGGCTGTCAGGAAGTCTTGGATGCGGCATAGACTTATTCGAACTTCAGATGTGGTGGCTCGGTTTTTCGTATC ATTGCATGCACGGATGGATGTGAATTTGGAACTGAAGAAAGAAGCAGAGTTTTTCGGAGATATCGTCATAGTGCCTTACATGGATAACTACGACCTTGTA GTGCTCAAAACTGTCGCCATCTGCGAATATGGGGTCCATATTGTCGGAGCAAAGTATATCATGAAGGGAGACGATGACACATTCATAAGGGTAGAGACAG TTCTTAATGAAGCCAAGAAGGTTCCTGAGAGCAGGAGCTTGTATATAGGGAACATAAATTACTTCCACAAGCCCCTCCGACATGGTAAATGGGCTGTGAC GTACCAGGAGTGGCCAGAGGAAGACTACCCGCCATATGCAAACGGACCTGGCTACATCTTATCTGCAGACATAGCCAATTTCATCGCGTCGGAGTTTGAG AAACATAAATTAAGACTGTTTAAAATGGAAGATGTCAGCATGGGAATGTGGGTTCAGAAGTTCAACAGAACGAAAACAGTCCAATACGTACACAGCTTGA AGTTCTGCCAGTTTGGATGCTTTGAAGGATATTACACCTCGCACTACCAGTCCCCGAGGCAGATGATCTGTCTCTGGGAAAAACTTCAAAAGTTCGGTTT GCCTCAATGCTGCAACATGAGATGA
AA sequence Show only first row Show all	>Lus10004256 pacid=23177828 polypeptide=Lus10004256 locus=Lus10004256.g ID=Lus10004256.BGIv1.0 annot-version=v1.0 MKRGKSDTRLDKFGAVTRQRSLHILIALGLLYFLFITVEIPLLFNSATPTSSSSSSSSVSSDYITYPSKLQSEQDFQEQDAPSRPASWVSESSPTQTTPP KRIVSGLKFDPETFDPTKKDRSVELHKSAKTAWEVGRKMWDEIERDEFKFLDLDKKKQSEKNRSSESSCPNSVSLTGSEFLKRGRLVELPCGLTLGSHIT VVGKPRAAHAEDVPYISLIKKGKPRVMVSQFMMELQGLKIVDGEDPPRVLHFNPRLKGDWSSRPVIEQNTCYRMQWGTGVRCEGWKSKADEETVDGQVKC EKWIRDDDNRSEESKANWWLSRLIGRTKKVTFDWPFPFVEEKMFVLTLTAGLEGYHVNVDGRHVTSFPYRTGFTLEDATGLTVYGDVDVHSVFAASLPAT HPSFAPQRHLEKSIVWRAPALPEGPVELFIGILSAGNHFAERMAVRKSWMRHRLIRTSDVVARFFVSLHARMDVNLELKKEAEFFGDIVIVPYMDNYDLV VLKTVAICEYGVHIVGAKYIMKGDDDTFIRVETVLNEAKKVPESRSLYIGNINYFHKPLRHGKWAVTYQEWPEEDYPPYANGPGYILSADIANFIASEFE KHKLRLFKMEDVSMGMWVQKFNRTKTVQYVHSLKFCQFGCFEGYYTSHYQSPRQMICLWEKLQKFGLPQCCNMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62620			Galactosyltransferase family p...		Lus10004256 [exp]	0	1
AT5G62620			Galactosyltransferase family p...		Lus10042164 [exp]	2.4	0.9455
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	4.2	0.9587
AT3G55230			Disease resistance-responsive ...		Lus10030318 [exp]	6.0	0.9494
AT4G33590			unknown protein		Lus10041131 [exp]	6.2	0.9513
AT2G19070		SHT	spermidine hydroxycinnamoyl tr...		Lus10001282 [exp]	8.5	0.9394
AT5G19200		TSC10B	TSC10B, NAD(P)-binding Rossman...		Lus10010510 [exp]	10.6	0.9366
AT5G56040			Leucine-rich receptor-like pro...		Lus10018094 [exp]	11.0	0.9391
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	11.1	0.9486
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	11.2	0.9444
AT3G05390			unknown protein		Lus10029907 [exp]	13.0	0.9481

Compare expression of checked genes

Lus10004256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.