Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18950 608 / 0 DDT domain superfamily (.1) AT5G25580 243 / 1e-72 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042167 [exp] 1169 / 0 AT1G18950 697 / 0.0 DDT domain superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072200 [exp] 756 / 0 AT1G18950 691 / 0.0 DDT domain superfamily (.1) Potri.015G067300 [exp] 725 / 0 AT1G18950 665 / 0.0 DDT domain superfamily (.1) Potri.018G035700 [exp] 314 / 2e-98 AT5G25580 308 / 3e-100 unknown protein Potri.006G244800 [exp] 308 / 3e-96 AT5G25580 297 / 3e-96 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004259 pacid=23177798 polypeptide=Lus10004259 locus=Lus10004259.g ID=Lus10004259.BGIv1.0 annot-version=v1.0 ATGTCTCGCGACCAGCCGATCTCTCCGTCGCGAACCCCCAATGACGCCGGCGACGGAAATGGCGAGGTCGCCGTTAAACCCCAGCCTTCCGAGCCCACCA CTGTCTACCGGAGTAATCGACCTTCTCGCGCTTGTACCCTTCGCGCTGCTGCTAAGCTTAAGCAGGCTACTGCTAATAATGACCGCAATCACAAGCCCAA GAAGGACCGCCGCCGCCAGAAGCAGCAGCAGCGGCGTCGGCGGCAAGAGGAGGCGGATGAGGAGGAGGTTGACGAGGACGGCGGCGGGGACGAGTCGCCG CCGCATGAGGGGAAATGTAGTGGTAGTAGTAGTAAGATTGTGACCTCGCTGGTGGCTCCTCCGGAGCCGGCTCAGTTGTCACGTTGGAACCTCCGTTCAA TGTGGGAGTTAGCTTCAGTACTCAATTTCCTGCATGTGTTTAGACCTTTCCTGAATATACCAGTTGAGTTCTCGGCTGAGGAGTTCGAAACTGCACTTCT CACACCGAATTACACATTGGGATCAATTCATATGCCTTTGTTGAAGGCAATACCTCCCATTACTCGGACGGCTCTCACACAGGATACTTGGATCACGGTT TTGTGCAGAAAACTAAGAGACTGGTGGCATTGGGTTGCAGAAGGAGATCTTCCCATAGTTGCTTCACATGGATTGGAGATTGAAGAATACAAATCACTAG ATCCTGGGGTTCGGGTGGTGATCTTGAAAGCTCTGTGTGACATTCGTGTTGAGCAAGAAGACATAAGGAACTATATCGACAGCTCCATTAAGCAGGGCGC TCAACTGTCATTGTTTCGCAAAGAACGTATTGGTGGTGATTCACATGGGATAAGTTATTGGTATGAACCTGATGAAGTGGTTGGCTTCCGGTTATACCGT GAAATAAGAAAAACAGATGTGCAGGCAAAAGGGAAGTCCAAAGGTTCTAAAGTCCTTCCTTCTACAGTATACCAGTGGGAAACTGTTGCTACGAATTATG ATGAGTTTGTGGAAGTTTCTGAGAAGCTTTTCGCCAGTGAAAATAGAACAGAAGCTGCCCTTGGGAAGAAGTTAAAAAATGATAAGCTCCCTGAGATTGA GAAGGTTCATAAGAGGAAAGAGCGGTTGCTGAAGAAGCAACACAGAGAAGCTCTACTTCTGGATAACTATCTGAATGTGGATGGGCTAGCAGCAGGACGC TCACTACGTGATAGAAAGCACGTGACCTACACTTTCGATGACTATGACCGATCAATAAATGAGGCCATTAAAGTCACCAAGAATAAACCACCTTCCCCGC AGCATGTTTCGAGAAGAGAAGGTATGCCCAGACGTGAAGCTACTTCAAACGGTGGAACAAGCGGCCCTTCATACACTGCTAATGATGGTGCTTTCAGTGC TATGTCCCCAATGTCATCCGATTATGAATTTAACGATAGTGATTATAAAGCTGAAGACTTGGATCGAGGCAACAGGCGGAGACAGAGGCCGCAACGGTAT TCTGAACGAGACTATGTTGAAGCCATCTCAGACAATGAGGCCAATAGCGAAGATGATATCGTCGGAGAAGCCGTTTATGATGAGGAATACCTGAGGAAAC GTAAACAGAGGAAGCTCTCCAGTGGCTCTGAAGGTGATGAGGAATACAAGTGGGATGGAGAAAATGGTGAAGAGGAGGAAGAGGAAGAGGAGGACGAGGA TTCCTTGAGTATCAGTGATGAGGAGAGTGATCAGCCTCGGAAATCAAGAAAGTTGCCGGGTCGCACTAGAAGAGAAACCGAGATGATTTCTGCTGACAAG TTCCGGTCTGGTTTGAGACGCAGTAGAAGGTCTACCAGAAACCGGATCGATTATAAGCAGTATGAGCTCTCAGACTCCGAAACAGATGCTGGAAAACAAC AGGAGAAGTTGGATGATGCTTCGGGAAACCACTCTGGTGCCAGCGAGAACGAAAATTCCTCAGGTGGAAGTCAAGACTACAACGACAATGGCAATGGCAA TGATAGTGATGCCGAGGATGATAATGATGATGATAATAACGATGACGACAATGATGATGAACAAGATCCCAAAGGAGATCAGGCTGATGAAGGCGGCTAT TCCAATGATGAGCAAGTTCCGAAAATAGATCATGCTGATCAAGGCTACTCCAAAACGGAAGTGAAAGAAGAAACTAAGCCACCTGAGAAATCAGGTAGCC CAGGTCAAGATGACGTTGACAGTGTAAAGAAACCACGTTTCCTCGATCTAAACGAACTGGCTCCAGGTTCAGGATTTGAGGAAGGTCCAAGTACGCTAAT GAAAGATGAAGACAGATGA
AA sequence Show only first row Show all	>Lus10004259 pacid=23177798 polypeptide=Lus10004259 locus=Lus10004259.g ID=Lus10004259.BGIv1.0 annot-version=v1.0 MSRDQPISPSRTPNDAGDGNGEVAVKPQPSEPTTVYRSNRPSRACTLRAAAKLKQATANNDRNHKPKKDRRRQKQQQRRRRQEEADEEEVDEDGGGDESP PHEGKCSGSSSKIVTSLVAPPEPAQLSRWNLRSMWELASVLNFLHVFRPFLNIPVEFSAEEFETALLTPNYTLGSIHMPLLKAIPPITRTALTQDTWITV LCRKLRDWWHWVAEGDLPIVASHGLEIEEYKSLDPGVRVVILKALCDIRVEQEDIRNYIDSSIKQGAQLSLFRKERIGGDSHGISYWYEPDEVVGFRLYR EIRKTDVQAKGKSKGSKVLPSTVYQWETVATNYDEFVEVSEKLFASENRTEAALGKKLKNDKLPEIEKVHKRKERLLKKQHREALLLDNYLNVDGLAAGR SLRDRKHVTYTFDDYDRSINEAIKVTKNKPPSPQHVSRREGMPRREATSNGGTSGPSYTANDGAFSAMSPMSSDYEFNDSDYKAEDLDRGNRRRQRPQRY SERDYVEAISDNEANSEDDIVGEAVYDEEYLRKRKQRKLSSGSEGDEEYKWDGENGEEEEEEEEDEDSLSISDEESDQPRKSRKLPGRTRRETEMISADK FRSGLRRSRRSTRNRIDYKQYELSDSETDAGKQQEKLDDASGNHSGASENENSSGGSQDYNDNGNGNDSDAEDDNDDDNNDDDNDDEQDPKGDQADEGGY SNDEQVPKIDHADQGYSKTEVKEETKPPEKSGSPGQDDVDSVKKPRFLDLNELAPGSGFEEGPSTLMKDEDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18950			DDT domain superfamily (.1)		Lus10004259 [exp]	0	1
AT1G18950			DDT domain superfamily (.1)		Lus10042167 [exp]	1.0	0.9430
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	3.5	0.9145
AT3G44530		HIRA	homolog of histone chaperone H...		Lus10020585 [exp]	3.9	0.9174
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	4.7	0.9322
AT1G53050			Protein kinase superfamily pro...		Lus10025773 [exp]	5.7	0.9094
AT5G21150		AGO9	ARGONAUTE 9, Argonaute family ...		Lus10026750 [exp]	6.0	0.9178
AT3G06010		ATCHR12	Homeotic gene regulator (.1)		Lus10034064 [exp]	6.5	0.9210
AT2G36490		DML1, ROS1	REPRESSOR OF SILENCING1, demet...		Lus10035576 [exp]	7.4	0.9081
AT4G32420			Cyclophilin-like peptidyl-prol...		Lus10008079 [exp]	8.6	0.8894
AT5G46920			Intron maturase, type II famil...		Lus10003020 [exp]	9.5	0.9092

Compare expression of checked genes

Lus10004259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.