Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13700 100 / 4e-23 ATPAO1, APAO polyamine oxidase 1 (.1) AT3G59050 48 / 7e-06 ATPAO3 polyamine oxidase 3 (.1) AT1G65840 42 / 0.0007 ATPAO4 polyamine oxidase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042168 [exp] 389 / 2e-133 AT5G13700 337 / 4e-111 polyamine oxidase 1 (.1) Lus10019725 [exp] 205 / 6e-62 AT5G13700 365 / 2e-122 polyamine oxidase 1 (.1) Lus10041898 [exp] 177 / 4e-50 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10042127 [exp] 139 / 3e-37 AT5G13700 320 / 5e-105 polyamine oxidase 1 (.1) Lus10039599 [exp] 119 / 8e-30 AT5G13700 693 / 0.0 polyamine oxidase 1 (.1) Lus10029495 [exp] 104 / 7e-25 AT5G13700 587 / 0.0 polyamine oxidase 1 (.1) Lus10012283 [exp] 49 / 5e-06 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10015996 [exp] 49 / 6e-06 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 42 / 0.0008 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074600 [exp] 229 / 2e-71 AT5G13700 395 / 5e-134 polyamine oxidase 1 (.1) Potri.012G079500 [exp] 201 / 2e-60 AT5G13700 400 / 7e-136 polyamine oxidase 1 (.1) Potri.001G263400 [exp] 125 / 4e-32 AT5G13700 734 / 0.0 polyamine oxidase 1 (.1) Potri.009G058200 [exp] 123 / 2e-31 AT5G13700 756 / 0.0 polyamine oxidase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01593 [flax] [poplar] Amino_oxidase Flavin containing amine oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10004260 pacid=23177807 polypeptide=Lus10004260 locus=Lus10004260.g ID=Lus10004260.BGIv1.0 annot-version=v1.0 ATGAAGAAGTTCATTCTCTCGCAGATCTCCTTTCTTCTTCTTCTTCTCCTTCATGATGCACTTTCAGTATCCACCGCCGTCTCACCGCCGTCACACTCCG TGATCGTGGTTGGAGCCGGAATGTCAGGAATTATGGCGGCGAAAACACTCAAGGAAGGTGGAATACAGGACGTAGTGATCCTGGAAGCGACGTCGAGGAT CGGCGGCCGGATGAAGAAGTACGAGATCGGCGGAGGCGGGTTGGACGGAAAGGAAACGGTGGAAGAAGCAGAGCATTTCGCCAATGCCAGAGATGACTTC TGCGTAAACTTGAGCAGATTCCGGAGTTCCAAACCAGGGAAAGACGACGACGTTTCGCTTTTTGCCGGATACCATTTGTTCGGAAAGATTTCGGAGATGT CGTTGGATAGGTTGGTGTATTACGTCCACAACGATTACGATGCCGCGGAGTCGTCGGAAATGACGAGATTGAAGAACAGTTTTCTCAGGTGGAAGAACGC TAATCACGGCGAACAATCGTATTTCGTGGCAGATTCAAGAGCGTTCGAGGCTATAGTTCAGCACTTAGCCGCCCAGTTCTTGTCTTCTAATCTCACCAAC GATCCTCGTCTCCACTTCAACAAGACGTGGAAGAGAATTGCGATAGACGATTTCAGCATGACACTCTACACAAAGATATTCCTCAAATTTCCTTACACGT TCTGGCCAACTACAACACAGGTTACGCTCACATCCAACGAGGCTACTACCCGATTTGGCAGATGTTCGGGGAGGACATTCCGGAACCGGAGAGCATATTG GTGCCGAGGTGGTCGTCCTAGGTTCTACAAGGGGTGCTATTCGAATTGGCCTCCTTCTTCTGATTGGAATGTATTGGCTAATGTTGGCCGAGTTTACTTC ACTGGAGAGCACACCCACCACAAGTATTATGGACGGGTCACTGGGGCTTACTTCGCAGGGATCGAAACTGCCGAACATTTGATGAAAAATTTCAACACAA GTGCTTAA
AA sequence Show only first row Show all	>Lus10004260 pacid=23177807 polypeptide=Lus10004260 locus=Lus10004260.g ID=Lus10004260.BGIv1.0 annot-version=v1.0 MKKFILSQISFLLLLLLHDALSVSTAVSPPSHSVIVVGAGMSGIMAAKTLKEGGIQDVVILEATSRIGGRMKKYEIGGGGLDGKETVEEAEHFANARDDF CVNLSRFRSSKPGKDDDVSLFAGYHLFGKISEMSLDRLVYYVHNDYDAAESSEMTRLKNSFLRWKNANHGEQSYFVADSRAFEAIVQHLAAQFLSSNLTN DPRLHFNKTWKRIAIDDFSMTLYTKIFLKFPYTFWPTTTQVTLTSNEATTRFGRCSGRTFRNRRAYWCRGGRPRFYKGCYSNWPPSSDWNVLANVGRVYF TGEHTHHKYYGRVTGAYFAGIETAEHLMKNFNTSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10004260 [exp]	0	1
AT3G27030			unknown protein		Lus10041550 [exp]	1.4	0.8549
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Lus10024243 [exp]	2.6	0.8033
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10029746 [exp]	2.8	0.8434
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	3.5	0.8420
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10007942 [exp]	4.2	0.7877
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	5.5	0.8043
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Lus10018077 [exp]	5.7	0.7505
AT5G04830			Nuclear transport factor 2 (NT...		Lus10028847 [exp]	6.2	0.7814
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10001581 [exp]	7.1	0.8047
AT1G54215			proline-rich family protein (....		Lus10015652 [exp]	7.1	0.7751

Compare expression of checked genes

Lus10004260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.