Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62640 167 / 1e-45 AtELF5, ELF5 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042169 [exp] 404 / 1e-135 AT5G62640 244 / 3e-74 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G093000 [exp] 232 / 2e-69 AT5G62640 171 / 1e-46 EARLY FLOWERING 5, proline-rich family protein (.1.2.3) Potri.015G090200 [exp] 229 / 1e-68 AT5G62640 159 / 2e-42 EARLY FLOWERING 5, proline-rich family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09429 [flax] [poplar] Wbp11 WW domain binding protein 11
Representative CDS sequence Show only first row Show all	>Lus10004261 pacid=23177795 polypeptide=Lus10004261 locus=Lus10004261.g ID=Lus10004261.BGIv1.0 annot-version=v1.0 ATGGTGAAGACGACGAAAGGAGGCAAAGTTATGAACCCTACGGACGCCTTCCGTAAGGAGCTCCGTAAGAAGGAATTGAAACGGAATAAGAAGGAAAGGA AGAAGGTGAGGGAGGTTGGAATTTTGAAGAAAGATCCCGATGTTATAAAGGACCAGATACAGAAGCTGGAACAGATGAAGGCTGATGGGGCACTGGACAA AGCAAGAAAGCACAAGAAGAGACAGCTCGAGGATACACTTAATCTTGTGATAAAGAAGAGGAAGGAATATAATGAAAAACTGAAGGAGAAGGGTGAGACC CCTGTCATGTTCAGTCATCTAGGACCCCCTCGAAGGACATCTGCGGAAGAAGAAGAGCAAGCCAAGCACCCAAAGCCTGAGGACTCTGTGTATTACCATC CTACATTAAATCCTACTGGCGCTCCACCACCTGGAAAACCTCCAATGTACAAATCGTATATAGGTCCTCGTGTTCCTTTGTCTGCTGGGGCATCATCATC GCATGCAGAGTCAGAGGATGGTACTTTAGCAGTACCACTCCCTCCGCCCCCTCCTTTGCCAGAGTCCGGGAATGTGGACTCTGGTGATGGTACTGTACCT ACCTCTTTGCCTCTACCACCTCCTCCATTGCCCCCGCAACCTCCTGCATCAAACTTGGGTATGTCGCTGCCTCCTCTACCTTTGGCACCGCCACCTCCTG GTCCCCCACCTATAGACCAAGTTACAAGTTTTGCATCGTTTCAGCCACCTCCACCTGGCACTAATGACGGTGAAAATGAGAAAGATTCAGCTACATTCAC AGATGACTCATCGAAGAATGATCAGGTACCTGTTTTGCCACCTCCACCCCCTCCACCTGGAATGCCTATGAACTCATCCAGCAATCAGTTTGAAGCCACT TCATCTGGAGCAGAGGGTAATCATCCTACAGCAATTGACGGTACAAGAATGGTTCCACCGCCACCACCTCCTCCTAGGCAACAACCTCAACTGCCTGGAC CGCCCATGATCCAGGGCATGCAGCCTGATTTACTACCACTCGGAATGGGACGGTTCCCTCCCCCTCCTCCTCCACCCCCACCCGGTATGCGGCCGCCTTT AGCAGCTCCTGGGCTACCCGGCCAAGCAGCTCTTCCAGGAATGATGGCTCCAATGATGCCACAGCCACCATATGGTCCGCCACCTGGACCTCCGCCAATG ATGCGACCACCACTACCTCCTGGCCCTCCTCCTAGTATGCTAGAAGACGGCATGGGTAGGTTTATCGCTCCCCAGAAACCATCTTACGTGAAATCTGCTG CGTCTACTGTCGTTAAGAGGCCTCTCGCACAGCACACCCCGGAACTTACGGCCATGGTCCCTGCATCTGTGAGAGTCAGGAGAGAAACTGCTGCCTTGAA ACCAAAACCGAAGCCAATGATGTCTTCGGTATCCACAAGGCCTGTAGCTCATACCGTCTTAAAGCTTGCCCCACATACTTCGTCAGCACCGGCCGTAGCA ACGAAAAGTCAAACGAAAAACCAGAGTGTCGACGACTCGTACTCGGCCTTCTTGGAAGACATGAAGGCACTTGGTGCGCTTGATAGTTGA
AA sequence Show only first row Show all	>Lus10004261 pacid=23177795 polypeptide=Lus10004261 locus=Lus10004261.g ID=Lus10004261.BGIv1.0 annot-version=v1.0 MVKTTKGGKVMNPTDAFRKELRKKELKRNKKERKKVREVGILKKDPDVIKDQIQKLEQMKADGALDKARKHKKRQLEDTLNLVIKKRKEYNEKLKEKGET PVMFSHLGPPRRTSAEEEEQAKHPKPEDSVYYHPTLNPTGAPPPGKPPMYKSYIGPRVPLSAGASSSHAESEDGTLAVPLPPPPPLPESGNVDSGDGTVP TSLPLPPPPLPPQPPASNLGMSLPPLPLAPPPPGPPPIDQVTSFASFQPPPPGTNDGENEKDSATFTDDSSKNDQVPVLPPPPPPPGMPMNSSSNQFEAT SSGAEGNHPTAIDGTRMVPPPPPPPRQQPQLPGPPMIQGMQPDLLPLGMGRFPPPPPPPPPGMRPPLAAPGLPGQAALPGMMAPMMPQPPYGPPPGPPPM MRPPLPPGPPPSMLEDGMGRFIAPQKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRRETAALKPKPKPMMSSVSTRPVAHTVLKLAPHTSSAPAVA TKSQTKNQSVDDSYSAFLEDMKALGALDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10004261 [exp]	0	1
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Lus10042169 [exp]	1.7	0.8816
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10009275 [exp]	3.2	0.8193
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	6.9	0.7515
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10027132 [exp]	8.5	0.7625
AT2G32600			hydroxyproline-rich glycoprote...		Lus10021506 [exp]	10.1	0.8068
AT1G48620		HON5	high mobility group A5 (.1)		Lus10032231 [exp]	12.6	0.7648
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10021471 [exp]	13.4	0.7635
AT4G19190			zinc knuckle (CCHC-type) famil...		Lus10035690 [exp]	22.2	0.7397
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	27.9	0.6819
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Lus10034844 [exp]	34.2	0.7110

Compare expression of checked genes

Lus10004261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.