Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47730 678 / 0 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 613 / 0 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) AT5G61690 587 / 0 ABCA11, ATATH15 ARABIDOPSIS THALIANA ABC2 HOMOLOG 15, ATP-binding cassette A11, ABC2 homolog 15 (.1) AT2G41700 164 / 1e-41 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT5G61700 157 / 2e-39 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47790 155 / 6e-39 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT5G61740 154 / 1e-38 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47780 152 / 4e-38 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT3G47740 150 / 3e-37 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT3G47750 150 / 3e-37 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023613 [exp] 707 / 0 AT3G47730 1360 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10024244 [exp] 704 / 0 AT3G47730 1349 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10042172 [exp] 500 / 1e-169 AT5G61730 449 / 5e-147 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) Lus10023612 [exp] 153 / 3e-38 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10012755 [exp] 135 / 3e-32 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023157 [exp] 123 / 2e-28 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10027545 [exp] 58 / 2e-08 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10000339 [exp] 57 / 4e-08 AT1G51460 837 / 0.0 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 57 / 5e-08 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069800 [exp] 685 / 0 AT3G47730 1245 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.015G063500 [exp] 675 / 0 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.006G049300 [exp] 172 / 4e-44 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.015G063400 [exp] 156 / 3e-39 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.012G069700 [exp] 151 / 9e-38 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.015G027600 [exp] 63 / 5e-10 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 59 / 7e-09 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.018G132000 [exp] 55 / 5e-08 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Potri.007G104801 [exp] 54 / 4e-07 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 53 / 6e-07 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10004262 pacid=23177793 polypeptide=Lus10004262 locus=Lus10004262.g ID=Lus10004262.BGIv1.0 annot-version=v1.0 ATGGCCTCCAAGCGAATTATTCCGGCGGCGAAAAACTCCCTCGGATCGGAGATGATTCCGCCTCCAAGATCCTTCGGAGATCCTAACTTTAACTGGATCA TCGGATTGGAGGAATTCGCGCATCCTGCTAGAGATCATCTTTCTGTAATGTCTTCATTTGCGTCGGCATTCTTCCTAGCGTTTTCCATGTTTGGATTTGT TTTGCAAATTAGTGCTTTGGTCACGGAAAAAGAGCTCAAGCTTCGTCAGGCAATGAGCACGATGGGCCTTTATGATTCGGCGTACTGGCTCTCGTGGATC GTATGGGAGGGAATCTTTGTTTCGATCTCTTCGCTTTCGCTAGTTCTCTTCGGAATGATGTTTCAGTTTGTCTTCTTCTTGAAAAACAGCTTCTTAGTTG TTTTCCTGGTCTTCTTTCTTTTCCAGTTCAATATGGTTGGTTACGCATTCATGCTGTCGAACTTCATCAGCAAGTCGTCTTCAGCCACAACTGTAGGATT CTCAGTATTCATAGTGGGACTCCACACTTTTTTTGCCATAGACAACTTCCCCTACAGTGCCGGCGTTTCAATCACTGTGAGGACTATCTGGTCATTTTTC CCACCAAATCTTCTAACTGTGGCACTGATACGGCTTAGTGATGCTACTGACTATCCAAGTAGTGTCGGTATTAGCTGGAGCGAACGATCAGAATGCCCAG TCGACGCTCCGGAGTGTAAAATGACAATTAATGATATCTACAGATGGCTGGCGGCTACAGCTTTGCTCTGGTTTGCTCTGGCAATCTACCTTGATAACAT GATGCCCAATGCTTACGGTGTCAGGAAGTCTCTATTCTACTTCTTGAATCCATCCTACTGGTTTGGGAAGGGCGGAAAGCAGTTGGAAGGAGGCGTTTGT AGCTGTTCTAGCTCGCTACCAACACAGGAACATCTTCCTCCAGATGATGAAGATGTGCTTGAAGAGGAGACCACAGTCAAGAGAGATTTTCTTGAAGGTA CAGTTGATCCAACTGTTGCAGTTCAGATCCGTGGACTTGCAAAGACGTATCCTGGAACCAAGAAGGGTGGTTGGTGCTGCTGCTGCTGTAGTTGCAAGAA GTCTTTACCTTATCACGCTCTTCAGAAGGGCCTCTGGATGAACATTGCAAAGGATCAGTTATTTTGTCTGCTTGGACCTAATGGTGCAGGGAAAACTTCA GCAATCAATTGCTTGACTGGGATATCACCAGTAACCAGTGGAGATGCATCAATATATGGGTATTCCGTTAGAAGCAGCGGTGGCATGTCCAGCATCAGAA AGCTAATGAGTGTTTGTCCTCAGCTCTTTGCTAGCATTAAGGGCCTCCCTCTATCAAAGGTTAACCAGGTTGCTGAGGAGTTGTTAGCAAAGGTGAAACT TACCTCTGACGCAAAGGTAACATCCGGGAGTTACAGTGGAGGTATGAAGCGACGGCTAAGCGTTGCAATAGCGCTCATTGGTGACCCGAAGCTACTCATT TTGGACGAACCGCATGTCTGGGACACGATACAAGAAGCAAAACAAGGTCGCGCAATAATTTTAACGACTCATTCCATAGAGGAAGCAGATGTTCTGAATG ACCGGATCGGGATCATGGCCAAAGCTTCAATCAGGCTGAAGTCCAAATTCGGGACTGGCTTCGTCACTAATGTAAGCTTCAGCCAAAACCCTGGTGGAGA AGAGAACCCGGTTCACCAAGAGGCAGTGAAACAGTTCTTCGGATGGAATCTGGCAGTGGCTCCAGTAGAGTCGATGAGATCCTTCATGACTTTCGTCATT CCTCGCGATAGAGAGAAGCTTCTAACAAACTTCTTTGAGGAGCTGGAGGCCAGACGAGCTGCATTTGGCATAAGAGACATACAGCTTGGCCTTTCGACAC TAGAAGAAGTTTTCCTAAGAATAGCCAGGGAAACAGAGCTAGAAAGTACTACCGCAGAGGGCCGATTCGTTACTCTCAAATTGACCTCTGGAGCTTTGAT TCAGAGTCCTCTGAAAACCCCAGAGGTATCATGGTTGAAGTTTACTGGGAACGGACGATACTGGCTCCCTCTGCACTTCCGGTCACTCCCAAGAAATGCT GGTTCCTCCGAGTGCACAACCATTGATGTCTGCAACTGCGCCAGCTTCGCGAAGAAGCATCTTTGGCAGGAAAAAGCTGGTATACGGACTGGTTATCAAT GA
AA sequence Show only first row Show all	>Lus10004262 pacid=23177793 polypeptide=Lus10004262 locus=Lus10004262.g ID=Lus10004262.BGIv1.0 annot-version=v1.0 MASKRIIPAAKNSLGSEMIPPPRSFGDPNFNWIIGLEEFAHPARDHLSVMSSFASAFFLAFSMFGFVLQISALVTEKELKLRQAMSTMGLYDSAYWLSWI VWEGIFVSISSLSLVLFGMMFQFVFFLKNSFLVVFLVFFLFQFNMVGYAFMLSNFISKSSSATTVGFSVFIVGLHTFFAIDNFPYSAGVSITVRTIWSFF PPNLLTVALIRLSDATDYPSSVGISWSERSECPVDAPECKMTINDIYRWLAATALLWFALAIYLDNMMPNAYGVRKSLFYFLNPSYWFGKGGKQLEGGVC SCSSSLPTQEHLPPDDEDVLEEETTVKRDFLEGTVDPTVAVQIRGLAKTYPGTKKGGWCCCCCSCKKSLPYHALQKGLWMNIAKDQLFCLLGPNGAGKTS AINCLTGISPVTSGDASIYGYSVRSSGGMSSIRKLMSVCPQLFASIKGLPLSKVNQVAEELLAKVKLTSDAKVTSGSYSGGMKRRLSVAIALIGDPKLLI LDEPHVWDTIQEAKQGRAIILTTHSIEEADVLNDRIGIMAKASIRLKSKFGTGFVTNVSFSQNPGGEENPVHQEAVKQFFGWNLAVAPVESMRSFMTFVI PRDREKLLTNFFEELEARRAAFGIRDIQLGLSTLEEVFLRIARETELESTTAEGRFVTLKLTSGALIQSPLKTPEVSWLKFTGNGRYWLPLHFRSLPRNA GSSECTTIDVCNCASFAKKHLWQEKAGIRTGYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Lus10004262 [exp]	0	1
					Lus10002291 [exp]	2.2	0.9693
					Lus10022993 [exp]	3.5	0.9611
AT3G06530			ARM repeat superfamily protein...		Lus10026144 [exp]	4.5	0.9511
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	5.0	0.9510
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10013532 [exp]	5.2	0.9246
AT5G58980			Neutral/alkaline non-lysosomal...		Lus10021829 [exp]	5.5	0.9536
					Lus10032696 [exp]	7.7	0.9413
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10026057 [exp]	8.4	0.9330
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Lus10038325 [exp]	10.2	0.9113
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10040160 [exp]	10.4	0.8148

Compare expression of checked genes

Lus10004262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.