Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74690 338 / 2e-108 IQD31 IQ-domain 31 (.1) AT1G18840 308 / 3e-97 IQD30 IQ-domain 30 (.1.2) AT2G02790 183 / 6e-50 IQD29 IQ-domain 29 (.1) AT1G14380 177 / 5e-48 IQD28 IQ-domain 28 (.1.2.3) AT1G19870 95 / 4e-20 IQD32 IQ-domain 32 (.1) AT4G14750 86 / 1e-17 IQD19 IQ-domain 19 (.1) AT1G72670 85 / 2e-17 IQD8 IQ-domain 8 (.1) AT4G00820 85 / 4e-17 IQD17 IQ-domain 17 (.1) AT1G01110 84 / 7e-17 IQD18 IQ-domain 18 (.1.2) AT2G26180 82 / 1e-16 IQD6 IQ-domain 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042173 [exp] 958 / 0 AT1G74690 400 / 3e-132 IQ-domain 31 (.1) Lus10030784 [exp] 157 / 4e-41 AT2G02790 214 / 3e-61 IQ-domain 29 (.1) Lus10013261 [exp] 152 / 2e-39 AT1G14380 212 / 7e-61 IQ-domain 28 (.1.2.3) Lus10033167 [exp] 97 / 1e-20 AT1G19870 211 / 4e-57 IQ-domain 32 (.1) Lus10006613 [exp] 88 / 3e-18 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10014870 [exp] 89 / 5e-18 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10012608 [exp] 87 / 1e-17 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10010104 [exp] 87 / 1e-17 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10021904 [exp] 86 / 3e-17 AT4G14750 314 / 2e-103 IQ-domain 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G063600 [exp] 478 / 9e-163 AT1G74690 407 / 2e-135 IQ-domain 31 (.1) Potri.012G069900 [exp] 455 / 7e-154 AT1G74690 387 / 8e-128 IQ-domain 31 (.1) Potri.017G079600 [exp] 226 / 2e-66 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.005G236200 [exp] 98 / 4e-21 AT1G19870 340 / 2e-104 IQ-domain 32 (.1) Potri.002G025200 [exp] 98 / 4e-21 AT1G19870 315 / 5e-95 IQ-domain 32 (.1) Potri.006G226600 [exp] 95 / 2e-20 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.002G178500 [exp] 88 / 6e-18 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 87 / 9e-18 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.018G062001 [exp] 83 / 1e-17 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.001G215200 [exp] 85 / 2e-17 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10004263 pacid=23177831 polypeptide=Lus10004263 locus=Lus10004263.g ID=Lus10004263.BGIv1.0 annot-version=v1.0 ATGGGCAAGTCACCTGCAAGGTGGCTCAAGAGTGTGCTGTTAGGGAAGAAGCCATCGAAATCCAGTGGCGGTAGAGGGAAGGAGAAAGGTTCAAATGAGA AAGAGGTTCTGGTTTCAGCCAAGGCCTCAGATGCTGATGTGACACTAATCTCTTCTGTGGTTTCCCAACCGGATACCGAGTTTACGGATATAGTTGAAAG GGGGCCAGAAGCAGAGAACAAGGAAAATGTAAACCCACCACATGATGGTGGACTTCTATTAGCTGGAAATCCGGGTGATAACTTACAAGGATGTCAGGTT GAAGTTGGAACAGATGACTTAGAAAAGATTAGAGAAGAGAATGCTGCAACAGTGGCACAAGCTGCTTTCAGGGGTTACCTGGCACGACGGGCGTTCCGGG CCCTTAAAGGCATAATAAGACTGCAGGCACTTATCCGTGGGCATTTGGTTAGAAGACAAGCTGTCGCCACTTTATGTTGTATGCTGGGAGTAGTCAAGTT TCAGGCTCTGGCTCGTGGCAAAACTGTCCGGAACTCAAATATAGGGCAAGAGATACATAAGATTTACGTCATTGTGAAGCCTCAGGATGGCAAAGCTGCT GATCCTGGTGGTGTTCATGTTACTCTCCTTGTGGCAAAGCGGTCGACAAGTGCATTTGTTCGTAAGCTTGTATTCTCATCACCGAGAGTGATGCCCCTAG GCCTGTATTATGCCTCTTCTGAACCAAATTCAGTCTCCAACTGGTTGGAACGCTGGTCAGCATCTTGCTGTTGGAGAACACTTCCACAGCCAAAGAACAC CCATCCTTCAAAACCACAGCGAAAGCAGGGCAGCGGTCAAGTGGTTGAAGCTGAAACTACTAGGCCAAAGCGCAGCGTTCGGAGGGTTCCTGCTGCTGCT AGTGCCGAAAATAGTACGGTGCAAGCAGCCGCAGAATACGAGAAACCCAAGCGGAGCTTCAGGAAGATCACAAGCCATCCAGTTGAAGCAGTACAGGAAA ACCCTCAGAGTGAGCTTGAAAAGGTGAAGAGAAGCTTGAGAAAGGTTCATAACCCTGTTGTGGAGAAAAATATCCAACCTGAGATTGAAGCCGAGAAGCC AAGGCAAAGCGTAGAGAAGATGTCAAGAACTCCGATCGAGAAGTTAAAACGAAGTGCAGAAGATGCTTCAGGCACTTCAAGTGAGAAGCCGGAAGAAACT ATAGAAAAAGCATCTGGAATGCCAGACGAGGCTATTTTGGGACAGCAAAATAAAACGAAGAAAATGTCATCCGAAGAAGCTGCGGTGGTACTCAATGAAC CAACTTTCGAGCAGTCTGCATCACCTGATGTGGAGAAGACTCCAGAACCACGACAGAAGGCCGAGATGGACGACGTTCTGCAGAGTGATCAGCCTTCACT TGAGCCAACACCAGCCGTTGAGAATGATTGCAAAGAAGAGACTACTCCATTGGCCAACGGAGATCAATGCGAGGAACTTGCCAGTAATGAAAATCACAAG TCTGGCAAGAGAGCTTCTGCCCAGGCTAATAAGCAAGAACTTCCAGAGAATGGGGTACAGAATAATAGTCCAACAGTCCCGAGTTACATGGCTGCAACTG CATCTGCTAAGGCCAAGCTGAGAGCGCAGGGCTCCCCGAGATTGAGCCAAGATAGTGCTGAGAAAAGCAACTCCACACGGCGACACTCTTTGCCCTCGGC TAATAGCAAGGTTAGCTCTCATTCACCAAGGACCCATCGTCCTGCCAATGGTAGCAGCGGCAAGGGGAAAACCAAAGGCGAAAAGGCCGTGCTGTCTTCT AGAGATGGAAATGTGAAAGGTGGGCAGGCAGAGTGGAGGAGGTGA
AA sequence Show only first row Show all	>Lus10004263 pacid=23177831 polypeptide=Lus10004263 locus=Lus10004263.g ID=Lus10004263.BGIv1.0 annot-version=v1.0 MGKSPARWLKSVLLGKKPSKSSGGRGKEKGSNEKEVLVSAKASDADVTLISSVVSQPDTEFTDIVERGPEAENKENVNPPHDGGLLLAGNPGDNLQGCQV EVGTDDLEKIREENAATVAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGVVKFQALARGKTVRNSNIGQEIHKIYVIVKPQDGKAA DPGGVHVTLLVAKRSTSAFVRKLVFSSPRVMPLGLYYASSEPNSVSNWLERWSASCCWRTLPQPKNTHPSKPQRKQGSGQVVEAETTRPKRSVRRVPAAA SAENSTVQAAAEYEKPKRSFRKITSHPVEAVQENPQSELEKVKRSLRKVHNPVVEKNIQPEIEAEKPRQSVEKMSRTPIEKLKRSAEDASGTSSEKPEET IEKASGMPDEAILGQQNKTKKMSSEEAAVVLNEPTFEQSASPDVEKTPEPRQKAEMDDVLQSDQPSLEPTPAVENDCKEETTPLANGDQCEELASNENHK SGKRASAQANKQELPENGVQNNSPTVPSYMAATASAKAKLRAQGSPRLSQDSAEKSNSTRRHSLPSANSKVSSHSPRTHRPANGSSGKGKTKGEKAVLSS RDGNVKGGQAEWRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	0	1
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10042173 [exp]	1.4	0.9193
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038755 [exp]	1.7	0.9008
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Lus10038754 [exp]	2.2	0.8936
AT1G69420			DHHC-type zinc finger family p...		Lus10036798 [exp]	2.4	0.8854
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	3.7	0.9018
AT5G58530			Glutaredoxin family protein (....		Lus10017438 [exp]	4.1	0.8520
AT4G02010			Protein kinase superfamily pro...		Lus10037526 [exp]	5.3	0.8985
AT1G35780			unknown protein		Lus10009931 [exp]	5.5	0.8576
AT1G75760			ER lumen protein retaining rec...		Lus10017213 [exp]	6.6	0.8487
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10026066 [exp]	7.1	0.8685

Compare expression of checked genes

Lus10004263 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.