Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62530 928 / 0 ATP5CDH, ALDH12A1 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) AT1G54100 71 / 1e-12 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT1G23800 67 / 2e-11 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT2G24270 62 / 6e-10 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT3G48000 61 / 9e-10 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT2G14170 61 / 2e-09 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G74920 57 / 1e-08 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT3G48170 53 / 4e-07 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G79440 49 / 9e-06 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G66658 48 / 1e-05 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042174 [exp] 989 / 0 AT5G62530 856 / 0.0 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) Lus10007084 [exp] 77 / 1e-14 AT2G14170 850 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10020459 [exp] 76 / 4e-14 AT2G14170 861 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10036288 [exp] 68 / 6e-12 AT2G24270 929 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10003640 [exp] 68 / 1e-11 AT2G24270 931 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10042149 [exp] 67 / 1e-11 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10004239 [exp] 66 / 2e-11 AT1G74920 667 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10013155 [exp] 61 / 2e-09 AT1G54100 886 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Lus10034115 [exp] 60 / 3e-09 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064200 [exp] 954 / 0 AT5G62530 963 / 0.0 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) Potri.001G242333 [exp] 73 / 2e-13 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G167100 [exp] 72 / 4e-13 AT1G54100 823 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Potri.001G283100 [exp] 72 / 5e-13 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.003G067700 [exp] 71 / 9e-13 AT1G54100 850 / 0.0 aldehyde dehydrogenase 7B4 (.1.2) Potri.018G020600 [exp] 69 / 5e-12 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.006G186800 [exp] 67 / 9e-12 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G109700 [exp] 67 / 2e-11 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.009G078600 [exp] 64 / 9e-11 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.015G070600 [exp] 63 / 3e-10 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10004264 pacid=23177797 polypeptide=Lus10004264 locus=Lus10004264.g ID=Lus10004264.BGIv1.0 annot-version=v1.0 ATGTACAGGCCACTTGTTGCCAGGTTGCTGCAAGACAGCGTCGCTACCCGAAAGGGCCCGTCCCATTTCGCCCGGAGGTTTTCTCATTCTTTGCCCTTCG CGACCGTAGATGCGGAGGAGCTATCTGGTGCTAAACCAGCTCAAGTGCTTAACTTGGTTCAGGGGAATTGGGGAGGTTCTTCCAGTTGGCACACGGTGGT TGATCCTTTAAACGGAGAACCGTTTATCAAAGTTGCTGAAGTAGACGAGACAGAAATCAAGCCATTTGTGGAGAGCTTGTCCAAGTGCCCTAAACATGGA CTGCACAACCCCTTTAAGTCGCCTGAGAGGTATCTTCTGTATGGGGACATATCTACAAAGGCAGGACACATGCTTTCCATACCAAAGGTGTCGGAGTTCT TTGCAAGGCTAATACAAAGAGTTGCCCCGAAGAGTTACCACCAGGCTCTTGGTGAAGTTCAAGTCACCCAGAAGTTTTTTGAGAACTTCACTGGTGATCA GGTTCGTTTCTTGGCAAGATCATTTGGAGTGCCGGGAAACCATCTTGGTCAGCAAAGTAATGGCTTCCGATGGCCTTTTGGTCCTGTTGCAATAATCACT CCATTCAATTTCCCACTAGAGATTCCGGTTCTTCAGTTGATGGGTGCTTTATACATGGGCAACAAACCCCTTCTTAAAGTTGATAGCAAGGTGTCCATTG TTATGGAACAAATGATGAGACTACTTCACTATTGCGGTTTGCCTGTGGAAGATGCTGACTTTGTCAACTCGGATGGGAAGGCTATGAACAAGATACTACT GGAGGCTAATCCCCGGATGACATTGTTTACTGGTAGCTCAAGAGTCGCGGAGAAGTTGGCTCTTGACTTAAAGGGCCGCATCAAGTTGGAAGATGCAGGA TTTGACTGGAAAATTCTAGGGCCTGATGTCAATGAGGCCGACTATGTTGCTTGGGTGTGTGACCAAGATGCATATGCATGTAGTGGTCAGAAGTGCTCTG CACAATCCATTCTATTCATGCACGAGAACTGGGCTGCTACTCCACTCATTTCGAGATTGAAGGAGCTTGCAGAGAGGAGAAAGTTGGAAGATCTAACTGT TGGCCCTGTCCTCACTGTTACCACCGAAGCGATGCTGGATCACCTGAACAAGTTGCTTCAGATACCGGGAGCTAAGCTGCTCTTTGGCGGCAAGCCTCTG GAGAATCATACCATTCCATCCATATATGGTGCCGTGAAACCAACAGCCGTGTATGTCCCTCTGGAAGAAATTCTGAAAGTGAGTAACTATGAACTTGTTA CAAAGGAAATCTTCGGACCATTCCAGGTTGTAACGGAGTACAAGAACAGTCAACTTCCTATGGTTCTGGAAGCTTTGGAGAGGATGCACGCACATTTAAC AGCTGCTGAAGTCATCGGGAACACTGTGAATGGCACAACTTATGCCGGGTTGCGAGCAAGAACGACAGGAGCTCCGCAGAATCATTGGTTTGGACCAGCT GGAGACCCGAGAGGTGCAGGGATTGGAACACCAGAAGCCATTAAACTCGTCTGGTCTTGCCACCGAGAGATCATTTACGATATCGGTCCTGTACCACACC ATTGGGAAATCCCTCCATCCACTTAG
AA sequence Show only first row Show all	>Lus10004264 pacid=23177797 polypeptide=Lus10004264 locus=Lus10004264.g ID=Lus10004264.BGIv1.0 annot-version=v1.0 MYRPLVARLLQDSVATRKGPSHFARRFSHSLPFATVDAEELSGAKPAQVLNLVQGNWGGSSSWHTVVDPLNGEPFIKVAEVDETEIKPFVESLSKCPKHG LHNPFKSPERYLLYGDISTKAGHMLSIPKVSEFFARLIQRVAPKSYHQALGEVQVTQKFFENFTGDQVRFLARSFGVPGNHLGQQSNGFRWPFGPVAIIT PFNFPLEIPVLQLMGALYMGNKPLLKVDSKVSIVMEQMMRLLHYCGLPVEDADFVNSDGKAMNKILLEANPRMTLFTGSSRVAEKLALDLKGRIKLEDAG FDWKILGPDVNEADYVAWVCDQDAYACSGQKCSAQSILFMHENWAATPLISRLKELAERRKLEDLTVGPVLTVTTEAMLDHLNKLLQIPGAKLLFGGKPL ENHTIPSIYGAVKPTAVYVPLEEILKVSNYELVTKEIFGPFQVVTEYKNSQLPMVLEALERMHAHLTAAEVIGNTVNGTTYAGLRARTTGAPQNHWFGPA GDPRGAGIGTPEAIKLVWSCHREIIYDIGPVPHHWEIPPST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10004264 [exp]	0	1
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Lus10042174 [exp]	3.0	0.9652
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Lus10007537 [exp]	5.1	0.9288
AT5G35740			Carbohydrate-binding X8 domain...		Lus10001167 [exp]	7.0	0.8984
AT3G29090		PME31, ATPME31	A. THALIANA PECTIN METHYLESTER...		Lus10041699 [exp]	15.7	0.9279
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10009441 [exp]	24.7	0.9207
AT1G08570		ACHT4	atypical CYS HIS rich thiored...		Lus10019087 [exp]	27.1	0.9243
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	31.5	0.9114
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Lus10028625 [exp]	33.9	0.9145
AT4G32480			Protein of unknown function (D...		Lus10011174 [exp]	34.0	0.9223
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008205 [exp]	36.2	0.8576

Compare expression of checked genes

Lus10004264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.