Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62760 387 / 4e-125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042176 [exp] 933 / 0 AT5G62760 391 / 2e-128 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G064600 [exp] 488 / 6e-164 AT5G62760 474 / 2e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08433 [flax] [poplar] KTI12 Chromatin associated protein KTI12
Representative CDS sequence Show only first row Show all	>Lus10004265 pacid=23177818 polypeptide=Lus10004265 locus=Lus10004265.g ID=Lus10004265.BGIv1.0 annot-version=v1.0 ATGGATCATCAATGGCGGCCAATCCCGCCACCCTATTCTCAGCCCACCATCTGCTCAGTTTGCTCCGCCTCTCACTACCCTTTTTGCAATCCGTACCCAC ACGCTCCTCCGCCGACTCACTATCCTCCTCCTCCTCCTCCACACACCCAGAACCCTAGATTCCCGCCGCAGCAGCAGTACTATCCCTGGCCCGGTCCTTA CCATGGAGGCAGTCCGGCCCCATATATCCATGTAGGCAGTCCGGACACGTGGCAGCGAAACCCTATCCCAGACTACGGGGAAGGGCTTCGGCCGCCGATG CAGCATAACGATTACGGCAGCAATCATGGTAATGGCGGTAGTAATGGATATGTTGGTGAATTCGATAGGAGTAATAAGAGACCTAGGGTTGATGCAACTG GATCCGGCGACTCTTCCTTTCACGATGAGCGTAGATTTAAGCTGATTCGCGATCACGGCGGTAGGAATGCAGTGCCACCGAAAGGGGAATCAGTTGCTAT AGGAAACGGCAGTTTTCAGAATACTGGGGTTGGTCCGCACGGGCAATTATTGCAGACTGATGTTCATCATGGTCCTAGTTCCAATGCACTTGCTGGACAT TCTAATTGGCAAAACCATATGCCCCCTCCTCAGCTTCCCAATGGCGTGGCGAATCACAGTAGAAACGATTTAAGGAACGGCTATGGTGTGCAGAACTTGA ATGAACAAAGAGGTTACCTGCCTCACCAGAGGCTTCTACCACCTCTTCCCATTTCACCTCCTCCGCCTCTTCCACACGAATTGCTTAAAGGATCTTCACC CCCAACGCTGTTTCCTATTCCGATTAGCTCCCCAGCACCTAGTTTTTATGGACATAGTACTCCTCCTCCCCGTGCTTTAACTGCTTATGCATTTGAGGGC CATCGGGAGGATCAAAGCTTTCTACGAAAGGAAGTATCTCCATCAAAGCCAATGATCATTGATGCTTCTTACTTATTTAAGCAACCTTATCGATCCAGCC GCCCTGATTATATTGTGATTATACTTCGCGGGCTTCCTGGTAGTGGTAAAAGTTACTCTGCCAAGATGATGAGAGATATGGAGGTTGAAGGTGGTGGGGA TGCACCAAGAATTCACTCTATGGATGATTATTTCATGACCGAAGTGGAAAAGGTAGAAGAGAGTGATGCTTCAAAATCTTCGAGCACAGCTAGAAACAAG AAATCTGCTGTGAAGACGGTGATGGAATATTATTATGAGTCCGAAATGGAAGAGCTGTACCGAGAAAGCATGCTGAAAGCATTCAAGAAAACTCTGGAGG AGGGAACGTTCAGGCTCGTGATTGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAATTTTGGGCAATTGCAAAGAGATCGGGCTATGAAGTCTA CATATCAGAAGCTGCTTATAAAGATCCTGAGGGTTGCACAGCTAGGAACGTGCATGGTTTTACCTTGGATGATGTGCAGAAAATGGCTGGGGAGGGGGAG GGGGCTCCATCTATGTATATGCAACTTGATGTCAAGTCATTATTTCATGGAGATAACTTGAAAGGAAATGGAATTCAAGAGGTTGACATGGATACTGAAG AAGGAGATGACAACCATTCATCGCAAGTACAGGAAAGACACACTGACAAGACAACAGTTCCCCCGGTTGAGGGCATAGCCCAAGCTTCAGTTTCTTCAAA AGACGTGAAAGTACAGGATGCTGACGAAGACCAAACAGGAGTAAAAGAGCTTGGTAAATGTAAGTGGTCAGAAAATTTTGACGACGATGATAGGAAGGGA CATGGAAAGACCAAGGGTAATGTAAATGCTCTTTCTGGACTGTTTCGACCTTGTGGGGAAAAAAGAAAATCTGTGCATTGGAGTGACCAGGCCGCCTCTA TTGGGTTCTCCATAGGTGCAGCAAAGACGGGAAATATCCACTCTTTAGTGATTGGTCCAGGGGCTGGATACAACTTGAAGGCTAATCCATTGCCTGAAGA GGAGATTCCGAGCTCGAGACCATCACAGAGCAGCAGGAAGTCGAGGAGGCAGACTGCATTCCAGGATCGACTAAGGGCCGAGCAGGAATCGTTCAAAGCT GTCTTCGATAGGAGGAAACAGCGGATCAGCGTACTTGATGTGGACGAGGAATGA
AA sequence Show only first row Show all	>Lus10004265 pacid=23177818 polypeptide=Lus10004265 locus=Lus10004265.g ID=Lus10004265.BGIv1.0 annot-version=v1.0 MDHQWRPIPPPYSQPTICSVCSASHYPFCNPYPHAPPPTHYPPPPPPHTQNPRFPPQQQYYPWPGPYHGGSPAPYIHVGSPDTWQRNPIPDYGEGLRPPM QHNDYGSNHGNGGSNGYVGEFDRSNKRPRVDATGSGDSSFHDERRFKLIRDHGGRNAVPPKGESVAIGNGSFQNTGVGPHGQLLQTDVHHGPSSNALAGH SNWQNHMPPPQLPNGVANHSRNDLRNGYGVQNLNEQRGYLPHQRLLPPLPISPPPPLPHELLKGSSPPTLFPIPISSPAPSFYGHSTPPPRALTAYAFEG HREDQSFLRKEVSPSKPMIIDASYLFKQPYRSSRPDYIVIILRGLPGSGKSYSAKMMRDMEVEGGGDAPRIHSMDDYFMTEVEKVEESDASKSSSTARNK KSAVKTVMEYYYESEMEELYRESMLKAFKKTLEEGTFRLVIVDDRNLRVADFAQFWAIAKRSGYEVYISEAAYKDPEGCTARNVHGFTLDDVQKMAGEGE GAPSMYMQLDVKSLFHGDNLKGNGIQEVDMDTEEGDDNHSSQVQERHTDKTTVPPVEGIAQASVSSKDVKVQDADEDQTGVKELGKCKWSENFDDDDRKG HGKTKGNVNALSGLFRPCGEKRKSVHWSDQAASIGFSIGAAKTGNIHSLVIGPGAGYNLKANPLPEEEIPSSRPSQSSRKSRRQTAFQDRLRAEQESFKA VFDRRKQRISVLDVDEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62760			P-loop containing nucleoside t...		Lus10004265 [exp]	0	1
AT5G62760			P-loop containing nucleoside t...		Lus10042176 [exp]	1.0	0.8887
AT1G76630			Tetratricopeptide repeat (TPR)...		Lus10025170 [exp]	2.4	0.8511
AT4G00060		MEE44	maternal effect embryo arrest ...		Lus10009279 [exp]	2.8	0.8345
AT1G03000		PEX6	peroxin 6 (.1)		Lus10009814 [exp]	3.2	0.8320
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	3.5	0.8635
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10001860 [exp]	3.5	0.8159
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	4.2	0.7705
AT1G04790			RING/U-box superfamily protein...		Lus10023671 [exp]	5.2	0.8004
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Lus10016768 [exp]	9.8	0.7381
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10011791 [exp]	10.6	0.8132

Compare expression of checked genes

Lus10004265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.