Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G75640 909 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 815 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 345 / 7e-102 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 337 / 5e-99 Leucine-rich repeat protein kinase family protein (.1) AT5G07280 332 / 1e-96 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G08590 317 / 1e-92 Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 314 / 9e-92 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65700 313 / 5e-91 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G28440 311 / 2e-90 HSL1 HAESA-like 1 (.1) AT5G61480 310 / 6e-90 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042177 [exp] 1199 / 0 AT4G36180 1253 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033924 [exp] 1139 / 0 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10033926 [exp] 1134 / 0 AT1G75640 1348 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 333 / 9e-99 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027221 [exp] 326 / 2e-95 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 324 / 2e-95 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 324 / 2e-95 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10036251 [exp] 323 / 2e-93 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10019248 [exp] 320 / 3e-93 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G235100 [exp] 1080 / 0 AT1G75640 1231 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.002G027400 [exp] 931 / 0 AT1G75640 1275 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G014700 [exp] 923 / 0 AT4G36180 1298 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 354 / 2e-106 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 346 / 2e-103 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G021700 [exp] 337 / 1e-99 AT1G08590 1286 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 335 / 3e-99 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 333 / 7e-99 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.012G139000 [exp] 335 / 3e-97 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.016G055400 [exp] 326 / 9e-97 AT2G41820 1311 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10004266 pacid=23177799 polypeptide=Lus10004266 locus=Lus10004266.g ID=Lus10004266.BGIv1.0 annot-version=v1.0 ATGGCAACGGCTATTTTCTTCTTCTTCTCCATTATCTCCCTCTTTCTCACCAGTACAACCATTGCCGCCGCCGCCGCTCCGGTTGTCTCCGCGATCCCTG CATTGTACGCCTTCCAACTCACTCTCCCCGACCCTCTCCGAGTTCGCGAGCTCCGCTTGCCTCAGCTCCAACTCGCTGGCCCACTCACTTCACACCTTGG TGAGTTACGCCAGCTCAGGAAGCTGAGCCTTCACTCCAACAACTTCAACGGCTCCATACCCAGCTCCCTCTCTCACTGCTCTCTCCTCCGAGCCCTCTAC CTTGACTACAATTCTCTCTCCGGTGACCTCCCGCTTTCCCTGCTCAATCTCACCAATCTCCAGGTCTTTACCGTCGCTTCCAATTTCCTCTCCGGGAGAA TCCCTACTACTACTGGATTCTCGGTTTCCCTCCGATTGCTTGACTTGTCCTCCAACTACTTCTCCGGAGACCTACCCTCCAACTTCTCTTCGGATTCCCA GCTTCAGCTTGTTAATCTCTCCTTCAACAATTTCTCCGGTGAGGTTCCAGCAAGTATTGGTCAGCTCCAGAGGCTTCAGTACTTGTCGCTTGATTCCAAC ATCCTCGACGGTACTCTGCCGTCGGCGATTTCCAACTGTTCGGCTCTTGTGCATCTGAGCGTCGAGGATAATGCTCTGAGAGGACTGATTCCAGCGACGA TCGGCTCCATTCCGAATCTCCAGGCGCTTTCTCTTTCTCGGAACGATCTCTCCGGCTCTATTCCGTCGAGTATTTTCTGCAATGTCCGGGGCAATTTTAC GGCGGGGCTTCGAATTCTGGAGTTAGGGTTTAATGCGCTCACGGGAATCGCTGAGCCGCCAAAGGACGGAGGAGGAGGAGGAAGATGTGTGAGTTCCTTA CAAGTTATAGACGTTCACGAGAACCGCATTAACGGCGTGTTCCCTATGTGGTTGACTAACATCACCACACTTGAAGTCATTGAACTTTCTCGAAACTTCT TCGCCGGATTCTTCCCGGCAGGGATCGGAAACCTTTCCCGGTTACGAGAGCTAAGAGCGGCCAGCAATTTGTTCAACGGCAGTCTCCCAACTGACATCGC AAAATGGAAGATTCCGGTGAGCATTGGTGGATTGGTGAAGCTGGCAACTCTAGATTTGAGCAAACAGAACTTGTCCGGCGAATTACCTGTAGAGCTGTTT GGGTTACCAAGTTTGGAAGTCATTCACTTGGAAGAGAACAACTTATCAATGGATATTCCAGAAGGATTTACCAGCCTAGTCAGTCTGCAATATCTCAATC TTACTTCCAATTCATTCAGCGGCGAGATCCCGGGGACTTATGGGTTTCTGAGGTCGTTGACTGTTCTCTCATTGTCAAAGAATAGCATTGCAGGGCAGAT TCCAGGGGAGCTTGGCAACTGTACAAGTCTCCAGGTCCTCGAGCTTCGTTCAAATCGTTTAACTGGCGAAATCCCAGGTGACATCTCGCATTTATCTCAT CTGCACCGGCTAGATTTGGGGCACAATAGTTTGAGAGGAGAAATTCCAGGGGAGATTGACAAATGCTTTTCTCTATCATCTCTTCTTTTGGATGACAATG AACTATCAGGCAGTATTCCAAAGTCATTATCCAAGCTATCCAATTTAACCGTTCTCAATCTTTCGTCCAACAGTTTGAGTGGACACATCCCAGCCAACAT TTCATCAATCACTGGGTTGAATTACTTGAATTTATCAGGGAACAGTTTGGATGGTGAGATCCCTGAGGCACTAGGCGTTCGCTTCAATGACCCTTCAGTG TTCTCCATGAACAACAGGTTATGTGGGAAACCATTGCACAAGGAATGCGCAAATGTGAAGAAGAGGAAGCTAAGAAAACTAATTCTGTTCATAGCTATTA TCACTGGTGGAAGTTTATTTCTAGCATTGTGTTGCTCAGGTTACATTTACAGCCTTCTCCGGTGGCGAACCAAGCTCCGGGAATTTGCAGCCGGGAAGAA GCCAAGTCCTAATCGAGCAAGTTCAGGAACAGACAGAGGCAGAGGAAGTAATGGTGGAGAGAACAATGGAGGGCCAAAGCTAGTAATGTTCAACAACAAG ATAACCTATGCAGAAACCATCGAGGCGACTAGGAATTTCGACGAGGAAAACGTTTTAAGCAGGGGAAGATACGGTTTGGTGTTTAAATCATCATACCAAG ACGGAATGGTGGTGGCTATTCGTCGCCTCCTGGACGGATCTACAGTTGAGGAGGCCACATTACGCAAGGAAGCAGAATCCTTGGGCAGAGTTAAGCACCG TAACTTAACAGTCCTGCGAGGCTATTACGCCGGTCCGCCACTGGATGGGAAACTTCTTGTTTACGATTACATTCCCAATGGAAACTTAGCTACATTGCTT CAGGAAGCTTCACACCAAGATGGCCATGTCCTGAATTGGCCAATGCGCCACTTGATTGCTTTAGGCATAGCACGTGGCCTAGCTTTCCTGCACTCTATAA CTATGGTCCACGGGGATCTCAAGCCGATGAACGTACTATTTGACGCAGATTTCGAAGCACATTTGTCTGAATTCGGACTGGATAAGCTTACCACTCCAGC ACCAAAGGAAGCTTCATCCTCTGTAGCTACAGTTGGGTCAGTAGGGTACGTGGCACCGGAGGCGGTGCTGACTGGCGAGGCAACAAAGGAAGCAGACGTT TACAGCTTTGGGATAGTGTTGCTGGAGATACTGACGGGGAAGAAACCGGCGATGTTCAATCAAGAGGGGGATGAAGACATAGTGAAGTGGGTGAAGAAGC AGCTGCAGACGGGGCAAGTTTCGGAGCTGTTGGAGCCCGGGTTGCTGGAGCTTGACCCGGAATTGTCAGAGTGGGAGGAGTTTTTGTTGGGGGTCAAAGT TGGACTTCTGTGTACGGCTGGTGATCCGGTTGATCGGCCGTCGATGAGTGACGTGGTGTTCATGCTAGAAGGGTGCAGGGTTGGTCCGGAGATGCCTTCC TCAGCTGATCCCACTTCGCTGCCGTCGCCAGTAGTACTGTAG
AA sequence Show only first row Show all	>Lus10004266 pacid=23177799 polypeptide=Lus10004266 locus=Lus10004266.g ID=Lus10004266.BGIv1.0 annot-version=v1.0 MATAIFFFFSIISLFLTSTTIAAAAAPVVSAIPALYAFQLTLPDPLRVRELRLPQLQLAGPLTSHLGELRQLRKLSLHSNNFNGSIPSSLSHCSLLRALY LDYNSLSGDLPLSLLNLTNLQVFTVASNFLSGRIPTTTGFSVSLRLLDLSSNYFSGDLPSNFSSDSQLQLVNLSFNNFSGEVPASIGQLQRLQYLSLDSN ILDGTLPSAISNCSALVHLSVEDNALRGLIPATIGSIPNLQALSLSRNDLSGSIPSSIFCNVRGNFTAGLRILELGFNALTGIAEPPKDGGGGGRCVSSL QVIDVHENRINGVFPMWLTNITTLEVIELSRNFFAGFFPAGIGNLSRLRELRAASNLFNGSLPTDIAKWKIPVSIGGLVKLATLDLSKQNLSGELPVELF GLPSLEVIHLEENNLSMDIPEGFTSLVSLQYLNLTSNSFSGEIPGTYGFLRSLTVLSLSKNSIAGQIPGELGNCTSLQVLELRSNRLTGEIPGDISHLSH LHRLDLGHNSLRGEIPGEIDKCFSLSSLLLDDNELSGSIPKSLSKLSNLTVLNLSSNSLSGHIPANISSITGLNYLNLSGNSLDGEIPEALGVRFNDPSV FSMNNRLCGKPLHKECANVKKRKLRKLILFIAIITGGSLFLALCCSGYIYSLLRWRTKLREFAAGKKPSPNRASSGTDRGRGSNGGENNGGPKLVMFNNK ITYAETIEATRNFDEENVLSRGRYGLVFKSSYQDGMVVAIRRLLDGSTVEEATLRKEAESLGRVKHRNLTVLRGYYAGPPLDGKLLVYDYIPNGNLATLL QEASHQDGHVLNWPMRHLIALGIARGLAFLHSITMVHGDLKPMNVLFDADFEAHLSEFGLDKLTTPAPKEASSSVATVGSVGYVAPEAVLTGEATKEADV YSFGIVLLEILTGKKPAMFNQEGDEDIVKWVKKQLQTGQVSELLEPGLLELDPELSEWEEFLLGVKVGLLCTAGDPVDRPSMSDVVFMLEGCRVGPEMPS SADPTSLPSPVVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36180			Leucine-rich receptor-like pro...		Lus10004266 [exp]	0	1
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	5.4	0.9466
AT1G80530			Major facilitator superfamily ...		Lus10001678 [exp]	7.9	0.8981
AT1G51130			Nse4, component of Smc5/6 DNA ...		Lus10013735 [exp]	9.0	0.9154
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10036453 [exp]	9.4	0.8895
					Lus10037590 [exp]	10.7	0.9444
AT1G26760		SDG35, ATXR1	SET domain protein 35 (.1)		Lus10037155 [exp]	11.1	0.9343
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009683 [exp]	12.6	0.9300
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	12.8	0.9337
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	16.6	0.9186
AT3G47460		ATSMC2	Structural maintenance of chro...		Lus10027215 [exp]	17.0	0.9295

Compare expression of checked genes

Lus10004266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.