Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042178 [exp] 65 / 2e-14 AT5G62750 54 / 3e-10 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004267 pacid=23177815 polypeptide=Lus10004267 locus=Lus10004267.g ID=Lus10004267.BGIv1.0 annot-version=v1.0 ATGGGAGGAACAGAAGAGACGGAGAAGAAGCATGACGGTGGCGAAGAGGAAGAACACCACAATAAGAAGAAGAAGGATAAGGATCATGAGGAGCAGTCTG GGGAGAAATCCAAGGAGAAGAAGGACAAGAAGAAGAAAGACAAAGAAGGTAAGAATAAGGAGGGTGATGATGGCGGCCACAAAGAGAAGAAGAAGAAGAA CCCTGAAGACAAGAAGGACCCTGCTAAACTCAAGGCTAAACTGCAGAAGATCGAGACCCAGATGCAGGAATTGACCCTGAAGAAAGAAGATATCCTCAAA CGAATCCACGAAGCTGAATCTAACCCTCCTCCCCCATCCGAGTAA
AA sequence Show only first row Show all	>Lus10004267 pacid=23177815 polypeptide=Lus10004267 locus=Lus10004267.g ID=Lus10004267.BGIv1.0 annot-version=v1.0 MGGTEETEKKHDGGEEEEHHNKKKKDKDHEEQSGEKSKEKKDKKKKDKEGKNKEGDDGGHKEKKKKNPEDKKDPAKLKAKLQKIETQMQELTLKKEDILK RIHEAESNPPPPSE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62750			unknown protein		Lus10004267 [exp]	0	1
AT1G14550			Peroxidase superfamily protein...		Lus10009898 [exp]	7.2	0.9103
AT4G14746			unknown protein		Lus10039368 [exp]	11.0	0.9161
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	12.0	0.8498
AT1G03220			Eukaryotic aspartyl protease f...		Lus10034036 [exp]	14.0	0.8854
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	19.5	0.8770
					Lus10031595 [exp]	22.9	0.8209
AT4G29990			Leucine-rich repeat transmembr...		Lus10038251 [exp]	24.7	0.8944
AT5G22290	NAC	FSQ6, FAN, ANAC...	fructose-sensing quantitative ...		Lus10013316 [exp]	27.0	0.8547
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Lus10035059 [exp]	30.8	0.8247
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10013231 [exp]	31.5	0.8238

Compare expression of checked genes

Lus10004267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.