Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62740 494 / 6e-179 AtHIR4, ATHIR1 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT1G69840 464 / 5e-167 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) AT3G01290 438 / 1e-156 AtHIR2 hypersensitive induced reaction 2, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G51570 322 / 7e-111 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT5G54100 55 / 2e-08 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) AT4G27585 49 / 2e-06 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033099 [exp] 516 / 0 AT5G62740 533 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10007268 [exp] 487 / 6e-176 AT5G62740 510 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015356 [exp] 483 / 2e-174 AT5G62740 506 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10036715 [exp] 461 / 5e-166 AT1G69840 516 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10037213 [exp] 461 / 5e-166 AT1G69840 514 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1.2.3.4.5.6.7) Lus10038907 [exp] 309 / 8e-106 AT5G51570 529 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10015032 [exp] 306 / 2e-104 AT5G51570 532 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10032909 [exp] 55 / 2e-08 AT4G27585 498 / 4e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070500 [exp] 491 / 8e-178 AT5G62740 484 / 3e-175 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078100 [exp] 485 / 2e-175 AT5G62740 488 / 3e-176 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.017G078000 [exp] 473 / 1e-170 AT5G62740 518 / 0.0 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G130600 [exp] 318 / 1e-109 AT5G51570 510 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G129000 [exp] 312 / 4e-107 AT5G51570 480 / 4e-173 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G065001 [exp] 294 / 7e-101 AT5G62740 312 / 4e-108 hypersensitive induced reaction 4, HYPERSENSITIVE-INDUCED RESPONSE PROTEIN 1, SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G005500 [exp] 54 / 3e-08 AT4G27585 463 / 3e-162 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.015G001900 [exp] 51 / 3e-07 AT4G27585 499 / 2e-176 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Potri.012G009800 [exp] 51 / 4e-07 AT4G27585 382 / 3e-130 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0433 [flax] [poplar] SPFH PF01145 [flax] [poplar] Band_7 SPFH domain / Band 7 family
Representative CDS sequence Show only first row Show all	>Lus10004268 pacid=23177790 polypeptide=Lus10004268 locus=Lus10004268.g ID=Lus10004268.BGIv1.0 annot-version=v1.0 ATGGGTAATCTGTTGTGCTGCGTGCAAGTTGATCAGTCCACTGTAGCTATAAAGGAAAGATTCGGGAAGTTTGAGGAAGTTCTCGAGCCAGGATGCCATT GTCTTCCGTGGTTTCTTGGGAGCCAGGTATCTGGCAATCTGTCTCTGAGAGTTCAACAGCTGGATGTTCGCTGTGAGACTAAGACAAAGGACAATGTTTT TGTTACCGTTGTTGCTTCAATTCAATACCGTGCCCTGGCAGAGAGGGCAAATGATGCTTACTACAAGCTCAGCAACACCAGGGGCCAAATCCAGGCCTAT GTCTTTGATGTGATTAGAGCAAGTGTCCCAAAGCTCAGTCTGGATGATACTTTTGAACAGAAGAATGACATTGCCAAAGCTGTTGAAGATGAACTCGAAA AGGCCATGTCTCACTATGGATACGAGATTGTGCAAACACTTATCGTCGACATTGAACCAGACGAGCATGTAAAGAGGGCCATGAATGAAATCAATGCTGC TGCAAGGATGAGGATGGCAGCCAACGACAAGGCAGAGGCTGAAAAGATTTTGCAGATCAAGAGAGCTGAAGGTGAGGCTGAATCCAAGTACCTCTCCGGG TTGGGTATTGCTCGCCAGAGGCAAGCAATTGTGGATGGCTTAAGAGACAGCGTTCTTGGATTCTCTGAGAATGTCCCTGGAACATCTGCAAGAGACGTCA TGGACATGGTTCTCGTGACACAATATTTTGACACGATGAAGGAAATCGGCGCTACCTCCAAATCCTCAGCGGTGTTCATCCCCCACGGTCCTGGTGCTGT TCGCGACGTTGCTGCTCAGATTCGCGACGGTCTCCTCCAGGCTAGAGTCTAG
AA sequence Show only first row Show all	>Lus10004268 pacid=23177790 polypeptide=Lus10004268 locus=Lus10004268.g ID=Lus10004268.BGIv1.0 annot-version=v1.0 MGNLLCCVQVDQSTVAIKERFGKFEEVLEPGCHCLPWFLGSQVSGNLSLRVQQLDVRCETKTKDNVFVTVVASIQYRALAERANDAYYKLSNTRGQIQAY VFDVIRASVPKLSLDDTFEQKNDIAKAVEDELEKAMSHYGYEIVQTLIVDIEPDEHVKRAMNEINAAARMRMAANDKAEAEKILQIKRAEGEAESKYLSG LGIARQRQAIVDGLRDSVLGFSENVPGTSARDVMDMVLVTQYFDTMKEIGATSKSSAVFIPHGPGAVRDVAAQIRDGLLQARV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	0	1
AT5G04550			Protein of unknown function (D...		Lus10028839 [exp]	1.0	0.8780
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10018353 [exp]	1.4	0.8471
AT4G01400			unknown protein		Lus10012607 [exp]	3.0	0.8231
AT3G53810			Concanavalin A-like lectin pro...		Lus10040773 [exp]	3.7	0.8003
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	5.3	0.8229
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	8.4	0.7828
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10036932 [exp]	9.2	0.6910
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	10.2	0.8146
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	10.7	0.8016
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10022096 [exp]	11.1	0.7362

Compare expression of checked genes

Lus10004268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.