Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01470 127 / 9e-35 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT5G65310 109 / 1e-27 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT5G15150 107 / 6e-27 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 107 / 8e-27 HD ATHB20 homeobox protein 20 (.1) AT1G69780 106 / 2e-26 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT2G22430 105 / 4e-26 HD ATHB6 homeobox protein 6 (.1) AT4G40060 104 / 6e-26 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT1G27045 95 / 5e-23 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT1G26960 94 / 2e-22 HD ATHB23 homeobox protein 23 (.1) AT2G46680 92 / 2e-21 HD ATHB7, ATHB-7 ARABIDOPSIS THALIANA HOMEOBOX 7, homeobox 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042180 [exp] 450 / 3e-160 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 223 / 4e-71 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 213 / 4e-67 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 131 / 8e-36 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 130 / 1e-35 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 130 / 2e-35 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10013277 [exp] 128 / 8e-35 AT3G01470 130 / 2e-36 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 127 / 2e-34 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10030800 [exp] 126 / 4e-34 AT3G01470 135 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065400 [exp] 282 / 4e-94 AT3G01470 136 / 4e-38 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.012G070900 [exp] 255 / 2e-83 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 124 / 3e-33 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.007G097100 [exp] 105 / 8e-26 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.002G100600 [exp] 103 / 9e-26 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.005G071900 [exp] 104 / 1e-25 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.017G081700 [exp] 103 / 2e-25 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.008G148200 [exp] 102 / 4e-25 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.010G093400 [exp] 102 / 6e-25 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.005G161500 [exp] 101 / 6e-25 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02183 [flax] [poplar] HALZ Homeobox associated leucine zipper CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10004270 pacid=23177826 polypeptide=Lus10004270 locus=Lus10004270.g ID=Lus10004270.BGIv1.0 annot-version=v1.0 ATGTCGGCGATGGCTTACGATGTCGGCGGCGGAGGAGGGACTTGTGTTACTAATTTGCCTCCTGCTCTGCTTCGGAACAACAAGAGAAGCCATCTAAGCG ATTCTCAGCCCCTTGATTCGTTTTTCCTTCCTGGGTCTTCTCCTTCTTTCCTTGGTCCAAGATCAATTGTCCGATTTGATGATGCAAGCCAAGTAAACGG ATCAACATCATCATCATCAAACAAGCCCTTCTTCTGCTCATTTGAACTGGATGAGAATGGGGACGATGATCTGGATGAGTATTTCCGGCAACCGGAGAAG AAGAGGAGACTTTCAGTAGAACAAGTCCAGTTTCTCGAGAAAAGCTTCGAGGTCGACAACAAGCTCGAGCCCGATCGAAAAGTCCAGCTTGCTAAGGACC TTGGCCTCCAGCCTAGGCAGGTTGCTATATGGTTCCAGAACCGCCGCGGAAGGTGGAAGACAAGGTGGAAGACTAAACAGCTCGAGAAAGATTACGATAC TTTGCAATCGAGCTTCGACAGCCTCCAGGCCGACTATGCTGGTCTTCTCAAGGAGAAGGACCAGTTGAAATCCGAGATCGATTTGCTGACAGAGAAGCTG CAGCAGAAGGAGAGAGCTAAAGCAGTTTCAGACATGTCTCAAGGTCAAATGGAGAAACCAGCTCAGCCATGTAAGCAGGAAGACATTAGCTCGGCAAGAA GTGATATCTTCGACTCGGAAAGTCCACATTACACGGATGGTGTGCACTCTTCTCTGCTGGAGGCTGGCGATTCTTCGTATGTATTCGAACCGGACCAGTC GTCGGATCTATCTTCGCAGGACGAAGAAGATAACTTGAGCAGGAATCTATTGCCTGCTGCAGCATCATATGTGCTGTTCCCAAAGCTGGAGGATGAGGAT GATTATTCAGATCCATCTGCAAGTTTTGAAGATAATGCCTTTTGGTCATCTTGGCCATACTGA
AA sequence Show only first row Show all	>Lus10004270 pacid=23177826 polypeptide=Lus10004270 locus=Lus10004270.g ID=Lus10004270.BGIv1.0 annot-version=v1.0 MSAMAYDVGGGGGTCVTNLPPALLRNNKRSHLSDSQPLDSFFLPGSSPSFLGPRSIVRFDDASQVNGSTSSSSNKPFFCSFELDENGDDDLDEYFRQPEK KRRLSVEQVQFLEKSFEVDNKLEPDRKVQLAKDLGLQPRQVAIWFQNRRGRWKTRWKTKQLEKDYDTLQSSFDSLQADYAGLLKEKDQLKSEIDLLTEKL QQKERAKAVSDMSQGQMEKPAQPCKQEDISSARSDIFDSESPHYTDGVHSSLLEAGDSSYVFEPDQSSDLSSQDEEDNLSRNLLPAAASYVLFPKLEDED DYSDPSASFEDNAFWSSWPY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10004270 [exp]	0	1
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	2.6	0.9301
AT4G28220		NDB1	NAD(P)H dehydrogenase B1 (.1)		Lus10018541 [exp]	4.9	0.9272
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Lus10037856 [exp]	11.8	0.9098
AT5G14120			Major facilitator superfamily ...		Lus10025123 [exp]	13.4	0.9127
AT1G58030		CAT2	cationic amino acid transporte...		Lus10013638 [exp]	16.9	0.9214
AT2G16530			3-oxo-5-alpha-steroid 4-dehydr...		Lus10042055 [exp]	21.2	0.8946
AT1G71090			Auxin efflux carrier family pr...		Lus10016704 [exp]	23.0	0.8959
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10041980 [exp]	24.0	0.8997
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	27.0	0.9046
AT5G23050		AAE17	acyl-activating enzyme 17 (.1)		Lus10038966 [exp]	30.5	0.9070

Compare expression of checked genes

Lus10004270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.