Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10560 986 / 0 Glycosyl hydrolase family protein (.1) AT1G78060 729 / 0 Glycosyl hydrolase family protein (.1) AT5G64570 719 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT3G19620 714 / 0 Glycosyl hydrolase family protein (.1) AT1G02640 706 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G09730 699 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G49360 696 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G09700 414 / 3e-136 Glycosyl hydrolase family protein (.1) AT3G47050 124 / 3e-29 Glycosyl hydrolase family protein (.1.2) AT3G47000 118 / 2e-27 Glycosyl hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022374 [exp] 761 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 760 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10010015 [exp] 721 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10020966 [exp] 719 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10016858 [exp] 629 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10019240 [exp] 629 / 0 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10007775 [exp] 531 / 0 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10043457 [exp] 138 / 1e-33 AT5G20950 809 / 0.0 Glycosyl hydrolase family protein (.1.2) Lus10037728 [exp] 124 / 1e-32 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G089100 [exp] 1120 / 0 AT5G10560 988 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168400 [exp] 778 / 0 AT1G78060 981 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G093900 [exp] 775 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 768 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G094000 [exp] 761 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.002G197200 [exp] 749 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 738 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.010G141400 [exp] 735 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.001G206800 [exp] 728 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.003G022900 [exp] 712 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00933 [flax] [poplar] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [flax] [poplar] PF01915 [flax] [poplar] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004271 pacid=23163588 polypeptide=Lus10004271 locus=Lus10004271.g ID=Lus10004271.BGIv1.0 annot-version=v1.0 ATGTCGCTCCATAACCTTCATTTCCTCTTCTCCTTCATCTTCTTCATCTTCTTTGCTTCAACCACTGCAAAAGAACCAATCTTTCTTCACTACCCTTGCA GCCCACCAAACCACAACCACTACCAATTCTGCAACAAATCCCTCACCATTCAATCCAGAGCTCACTCGCTAATCTCCCACCTCACCCTCTCAGAAAAAGC CCAGCAGCTCTCCGACAACGCCACCGGAATCCCTCGCCTGGGAATCCCAACCTACCAATGGTGGTCGGAATCCCTCCACGGAATCGCCATCAACGGCCCT GGAATCACATTCCAGGACGGTCCGGTCTCCGCGGCAACGCAGTTCCCTCAGGTGATACTCTCCGCCGCGGCGTTCAACAGGACGCTGTGGTTCCTGATCG GAGCGAGCGTGGGCGTGGAGGCTAGGGCGATGCATAATGTTGGTCAAGCTGGGTTGACTTTCTGGGCGCCGAATGTAAATGTGTTTAGGGATCCTAGGTG GGGGAGAGGGCAAGAGACTCCTGGGGAGGATCCATTGGTGGGTTCTGAGTATGCTGTTGTTTATGTTAAGGGGTTGCAAAGTGGGGGGTTTGATGGAAAT GATGGAAGAAGAAGGGAGGAAAGGATTGGTTTTGGTGACCATAGAGTTTTGGGAGAGGAGGAGGATGAAGTGCTTATGGTGTCTGCTTGTTGTAAGCATA CAACTGCTTATGACTTGGAGGATTGGGGGAACTTCAGTAGGTATTCATTCAATGCTGTGGTGACTGAACAGGACATGGAGGATACTTTTATGCCACCCTT TCGCGGCTGTGTACACGAAGGCAAAGCGACCTGCTTGATGTGTTCGTATAACCAAGTCAACGGCGTGCCTGCGTGCGCACGAAAGGATCTCCTCGAGAAA GCCAGGCGCGAATGGGACATGAAAGGATACATTGTTTCGGACTGTGACGCTGTTGGAACGATCCACGAGTATCAAAACTACACGAAAACCACCGAGGAAG CGGTCGCGATTACTCTCAAAGCCGGTATGGATATCAACTGCGGATCGGCTGTTTCGCTGCATGCTGAATCTGCTATTGCTCAAGGTATACTGCAGGAGAA GGACATAGACAGAGCTCTTCTCAACCTTTTTTCGATTCAGTTTCGACTCGGTTTGTACGATGGAGACCCGAGACAAGGGAAATTTGGGAAGCTTGGTCCT AAAGATGTTTGTAGTAAAGAACACAGAATGTTGGCTTTGGAAGCTGCCAGGCAAGGGATTGTTCTCCTTAAGAATGACAGGAGTTTTCTGCCGTTGATCA GTGGAGATGTCTCTTCACTTGCAGTTATTGGCCCGTTGGCAAATAATCGAACCAATATCGGTGGAGATTACACGGGGTATTCATGCGAGCCTCAGAGCCT CTATGAGGGCCTTAAAGGCTATGCAAAGAAGACGACTTTCGCAGGTGGTTGCGCTGATGTCCCTTGCGTATCTGATGCTCAATTTGACGAGGCAGTACGA GTAGCCAAGAAGGCGGATTTTGTAATCGTGGTTGCTGGACTCGATTTATCTCAAGAAACTGAAGATCATGACAGAGTTAGTCTTCTGCTACCAGGCAAAC AAATGTCCCTTGTTCTATCTGTTGCTTCAGCTAGTAAGAACCCTATAATTTTGGTCCTCACCGGTGGAGGACCGATCGATGTGTCGTTCGCGAAAGCTGA CCCTAGAATCTCCAGCATTCTTTGGATTGGATACCCAGCTGAAGCTGGTCCGAAAGCACTAGCAGAAGCCATATTTGGCGAGTATAATCCAGGTGGAAGA CTTCCCATGACTTGGTACCCCGAATCATTCACCAAGGTGCCAATGAACATCATGAACATGCGAGCGGATCCTGCTCAAGGCTATCCAGGCCGAACCTACC GGTTCTACACCGGGGATCAAGTGTACAGCTTCGGTCACGGCTTGAGCTACATCAACTATACATACAGTCTCTTGTCAACACCAAACAAGCTGACCTTGTT AGGATCCTCGACGACTCGAAAGAGAATCCTAACTGGCTCGAAACCGACCGGTTATGTACACGTGGACGACATATTACAATCGTGCAATTCGCTCAAGTTC TACGTCGTGGCTTCTGTGACAAATGCCGGACAAGTTGATGGAAGCCATGTAATCTTGCTGTTCGCCAGAGTTCCCGAAGCGACGAAGGGGACTCCTTTGA AGCAACTCGTGGGGTTCGACCGAGTTCATACTGTTTCCGGTGGTTCAACCGAAACGAGTATCTTGGTCGACCCGTGCAAACATTTGAGCGTAGCTGACGA AGGTGGGAGAAGGGTAATGCCTCTAGGGAACCATGTATTGATGCTGGGAGACTTGGAACATACGGTTGCAGTTGTTTGA
AA sequence Show only first row Show all	>Lus10004271 pacid=23163588 polypeptide=Lus10004271 locus=Lus10004271.g ID=Lus10004271.BGIv1.0 annot-version=v1.0 MSLHNLHFLFSFIFFIFFASTTAKEPIFLHYPCSPPNHNHYQFCNKSLTIQSRAHSLISHLTLSEKAQQLSDNATGIPRLGIPTYQWWSESLHGIAINGP GITFQDGPVSAATQFPQVILSAAAFNRTLWFLIGASVGVEARAMHNVGQAGLTFWAPNVNVFRDPRWGRGQETPGEDPLVGSEYAVVYVKGLQSGGFDGN DGRRREERIGFGDHRVLGEEEDEVLMVSACCKHTTAYDLEDWGNFSRYSFNAVVTEQDMEDTFMPPFRGCVHEGKATCLMCSYNQVNGVPACARKDLLEK ARREWDMKGYIVSDCDAVGTIHEYQNYTKTTEEAVAITLKAGMDINCGSAVSLHAESAIAQGILQEKDIDRALLNLFSIQFRLGLYDGDPRQGKFGKLGP KDVCSKEHRMLALEAARQGIVLLKNDRSFLPLISGDVSSLAVIGPLANNRTNIGGDYTGYSCEPQSLYEGLKGYAKKTTFAGGCADVPCVSDAQFDEAVR VAKKADFVIVVAGLDLSQETEDHDRVSLLLPGKQMSLVLSVASASKNPIILVLTGGGPIDVSFAKADPRISSILWIGYPAEAGPKALAEAIFGEYNPGGR LPMTWYPESFTKVPMNIMNMRADPAQGYPGRTYRFYTGDQVYSFGHGLSYINYTYSLLSTPNKLTLLGSSTTRKRILTGSKPTGYVHVDDILQSCNSLKF YVVASVTNAGQVDGSHVILLFARVPEATKGTPLKQLVGFDRVHTVSGGSTETSILVDPCKHLSVADEGGRRVMPLGNHVLMLGDLEHTVAVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10560			Glycosyl hydrolase family prot...		Lus10004271 [exp]	0	1
AT2G40060		CLC2	clathrin light chain 2, Clathr...		Lus10004389 [exp]	37.9	0.7057
AT3G26810		AFB2	auxin signaling F-box 2 (.1)		Lus10035161 [exp]	42.7	0.7455
AT3G27170		ATCLC-B, CLC-B	chloride channel B (.1)		Lus10012526 [exp]	54.4	0.7249
AT5G57740		XBAT32	XB3 ortholog 2 in Arabidopsis ...		Lus10019974 [exp]	57.1	0.7538
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Lus10039185 [exp]	86.1	0.7401
AT3G19990			unknown protein		Lus10017359 [exp]	90.1	0.7316
AT2G27310			F-box family protein (.1)		Lus10028024 [exp]	99.6	0.7327
AT3G18030		ATHAL3A	HALOTOLERANCE DETERMINANT 3, A...		Lus10034286 [exp]	104.9	0.7254
AT5G04980			DNAse I-like superfamily prote...		Lus10033398 [exp]	105.6	0.7209
AT2G25310			Protein of unknown function (D...		Lus10001919 [exp]	153.5	0.7079

Compare expression of checked genes

Lus10004271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.