Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58420 472 / 5e-171 Ribosomal protein S4 (RPS4A) family protein (.1) AT2G17360 472 / 7e-171 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2) AT5G07090 472 / 7e-171 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019239 [exp] 508 / 8e-176 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G103700 [exp] 473 / 4e-171 AT5G58420 465 / 3e-168 Ribosomal protein S4 (RPS4A) family protein (.1) Potri.016G124100 [exp] 472 / 7e-171 AT5G58420 458 / 2e-165 Ribosomal protein S4 (RPS4A) family protein (.1) Potri.015G033700 [exp] 470 / 4e-170 AT5G07090 468 / 3e-169 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2) Potri.015G079600 [exp] 466 / 1e-168 AT5G07090 460 / 4e-166 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2) Potri.013G011000 [exp] 464 / 7e-168 AT2G17360 452 / 6e-163 Ribosomal protein S4 (RPS4A) family protein (.1), Ribosomal protein S4 (RPS4A) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08071 [flax] [poplar] RS4NT RS4NT (NUC023) domain CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0107 [flax] [poplar] KOW PF00467 [flax] [poplar] KOW KOW motif CL0021 [flax] [poplar] OB PF00900 [flax] [poplar] Ribosomal_S4e Ribosomal family S4e
Representative CDS sequence Show only first row Show all	>Lus10004272 pacid=23163595 polypeptide=Lus10004272 locus=Lus10004272.g ID=Lus10004272.BGIv1.0 annot-version=v1.0 ATGGCGAGGGGTTTGAAGAAGCACTTGAAGAGGCTCAATGCTCCCAAGCATTGGATGCTCGACAAGCTCGGCGGCGCTTTCGCTCCTAAGCCTTCATCTG GGCCGCACAAGTCTAGGGAGTGCCTTCCTTTGGTTCTTATTCTGCGAAACAGGTTGAAGTACGCTTTGACCTACCGTGAGGTTCAGTCCATCTTGATGCA GCGTCATGTGATGGTTGATAACAAGGTCAGGACTGATAAGACCTTCCCAGCTGGGTTTATGGATGTGGTCTCCATCCCCAAGACCAATGAGAATTTCCGT CTGCTGTATGATACCAAGGGAAGGTTCAGACTGCACTCCATCCGTGATGAGGAGGCAAAGTTCAAGCTGTGCAAGGTCAGGAACATCCAATTCGGTTCCA AGGGTATCCCATACCTAAATACCTATGATGGCCGCACCATCCGCTACCCCGACCCGCTCATCAAGGCTAACGACACCATCAAGCTGGACCTCGATTCCAC TAAGATTGTTGACTTCATCAAGTTTGACGTTGGCAACGTTGTCATGGTCACCGGAGGCAGGAACAGAGGCCGAGTCGGGATCCTGAAGAACAGAGAGAAG CATAAGGGAAGCATCGAGACAGTCCACATCCAGGACTCTACTGGTCACGAGTTTGCCACTCTTCTGTCCAATGTTTTCACCATCGGCAAGGGTTCCAAGC CCTGGGTGTCTCTCCCCAAGGGCAAGGGTATCAAGCTTACCATCATTGAGGAGGCCAAGAAGAGGATTGCTGCTCAGGCTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10004272 pacid=23163595 polypeptide=Lus10004272 locus=Lus10004272.g ID=Lus10004272.BGIv1.0 annot-version=v1.0 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLILRNRLKYALTYREVQSILMQRHVMVDNKVRTDKTFPAGFMDVVSIPKTNENFR LLYDTKGRFRLHSIRDEEAKFKLCKVRNIQFGSKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLDSTKIVDFIKFDVGNVVMVTGGRNRGRVGILKNREK HKGSIETVHIQDSTGHEFATLLSNVFTIGKGSKPWVSLPKGKGIKLTIIEEAKKRIAAQAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58420			Ribosomal protein S4 (RPS4A) f...		Lus10004272 [exp]	0	1
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	1.4	0.9630
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017569 [exp]	2.0	0.9596
AT3G05590		RPL18	ribosomal protein L18 (.1)		Lus10031485 [exp]	2.2	0.9563
AT4G36130			Ribosomal protein L2 family (....		Lus10041923 [exp]	2.8	0.9605
AT3G57490			Ribosomal protein S5 family pr...		Lus10014909 [exp]	3.0	0.9599
AT3G03060			P-loop containing nucleoside t...		Lus10031211 [exp]	3.5	0.9456
AT5G48760			Ribosomal protein L13 family p...		Lus10043151 [exp]	4.7	0.9392
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10029824 [exp]	5.3	0.9441
AT5G04800			Ribosomal S17 family protein (...		Lus10041076 [exp]	5.5	0.9397
AT3G57490			Ribosomal protein S5 family pr...		Lus10009952 [exp]	5.7	0.9421

Compare expression of checked genes

Lus10004272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.