Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22660 664 / 0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) AT4G37900 646 / 0 Protein of unknown function (duplicated DUF1399) (.1) AT1G56230 130 / 5e-31 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) AT4G37682 51 / 3e-08 Protein of unknown function (DUF1399) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019239 [exp] 1157 / 0 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Lus10020675 [exp] 120 / 7e-28 AT1G56230 747 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2) Lus10029871 [exp] 118 / 3e-27 AT1G56230 771 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G042800 [exp] 784 / 0 AT4G37900 795 / 0.0 Protein of unknown function (duplicated DUF1399) (.1) Potri.002G108900 [exp] 610 / 0 AT2G22660 696 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2) Potri.013G013000 [exp] 142 / 8e-35 AT1G56230 777 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07173 [flax] [poplar] GRDP-like Glycine-rich domain-containing protein-like
Representative CDS sequence Show only first row Show all	>Lus10004273 pacid=23163590 polypeptide=Lus10004273 locus=Lus10004273.g ID=Lus10004273.BGIv1.0 annot-version=v1.0 ATGGAAGCGAAACAAGAGATGGAATGGCTAAAGGCGCAGAGGATTTCGACCGGCGTTGACCTTATGGCTGCGGCGAAACAGCAGCTTATTTTCCTTGCTG CTGTTGATAGGAATCGATGGCTGTATGAAGAGCCAGCCCTTGGGAAGGCGATCTACAGGTATAATGCTTGCTGGCTTCCCTTGCTTGCCAAACATTCTGA ATCAGCAACCTTTGAAGGGCCGCTTGTTGTTCCATTGGATTGTGAATGGATTTGGCATTGCCACAGGCTCAATCCTGTGCGATACAACTCGGACTGTTTG GAACTATTTGGATCGGTATTGGATAACTCCCATGTTGTATCTTCCGTTCAAAGGACCTGCACAAGAAAAACTGAGGAAATTTGGAACAAGTTGTACCCAG ATGAGCCTTACTGCTTAGACATGACGAGGGGAAATGAAAAATCAGTCACGGTTGAGAAATATTCGAAATATGATCTGGTTTCCGCAGTTAAACGGCAGGT TCCTTTCACCTATCAGGTGTCCAGGCCTCATATGAGCCATCATGTTTTCCTTGAAGAAGCTGTTGCCAGATACAAAGGGTTTCTTCATTTAATCAAGAGA AACCAGGAAAGGTCCATAAATGCCTTTTGCGTCCCAACGTATGACATTGATCTTATCTGGCACACACACCAGCTGCATCCTGTTTCATACTCTAAAGATC TGGGTGCACTACTGGGTAAAATATTGGAGCATGATGATACGGATTCAGACAGAACAAAAGGAAAGAAATTAGACGTTGGGTTTTTTGCAACTACGAAACA ATGGGAAGATACGTTTGGGTCAAGATATTGGAAAGCAGGTGCAATGTACAGAGGTGCTGCCCCATCTCCTGTTACTTTCAATCCTTCTGCATTGACTCTG TCGAGCAAAGAGTCGAAGCAGCTTAAAAATCATCACGACATAATTCAACTCCCGCAGCAGAAGATTGTGGAGGTGGTTATGTTGGAGATAGTTGGGGTGA AAAATTTGCCTCAAGGTCATAAAGGAAGCCTCCATGTCATGTTCAGTAAAAACCAGCCAGATCAATTTTTTAATGTCAAGAGAAAACTGAAAATACAGTC TGAATCCGGCGAGAAACAGGTTGTGTCTTTCCAATGTGAAGCGGAGGGAGATCTGTTGCTTGAACTAGTTTCACATTCACCTTCCAAATTACCAATAGCC AAAGAATTGAAGACACTGGGTACAACTTTACTTTCTCTGCAAAATCTTCTGAGCCCGATTTCCAGACTCTCAGAAGAAACATGGCTCGAACTGCTACCTG TTTCCAGGGAGATGAGCTCATCTCCTATCTGCCTGCGAGTTTCTATCTCGCTCACTGTCCCTGCTCAAGCTCCATATGTATTGGATTTGACTCATCCGAG GTCACTGTCTAAAGGATCGTGTTTCTTCCCACTACCTGGGAGGGTTCAGCACGCTAAGAGCTTGATGGATATCACCAGTGAAACTAATGGTGAAACAATG AGCTTGCAGATGAGGGACTCTAAGAAGACTAAGGAAAATGATAAAGGAGCTCCCATGAAGCAGGTAATCTTGCTCATGGAATCCGGTGAAGTTCAGACTG TTGCAGAATTTTCAAACTCCCAATGGTCTTTGATGGATTTGCAATGGAGCCTTCGACTTAAAAGCAAGTCCAACAAAGACGGTCTTCTAGCCGAGATGAT AGGCTGCAGGATGGTGAGGATTTTCCAAGGCAGAAAGCTGGATTTTGAGTCCAAACTCTGGGAGAAGCGGAGCTGTGAACAGTATTTAATGACTGCTGTG GAATTTTCCGCTGAACATCCGGAATACGAAAGCTTCACTCTAAATCTGAAACAGTCAAACGAGAAGAATGAGATACTAAAACCAACCACATTGTTGCACA AGGAGCAACCAGGAGGCGGCTGTGGCAGCGGCGGCCGCAGGGGCGCTGGCTGCGGAGGTGGATGTGGGGGGAGTATGGCCGAAAATGGCAGTGGATGTGG CAGTGGATGCGGAGGTGGATGTGGCGGGTGCGGTGGTGGGATGCTGAAGAGCAGCAGTGGGTGTGGAACTGGATGTGGAGGCTGTGGTGGAGGAGACACT GTTGTTGCTAACTCTGCCATTGAAGGTGGCCCTGGAGAGTTAACAGTGTGTGCTAGTTAA
AA sequence Show only first row Show all	>Lus10004273 pacid=23163590 polypeptide=Lus10004273 locus=Lus10004273.g ID=Lus10004273.BGIv1.0 annot-version=v1.0 MEAKQEMEWLKAQRISTGVDLMAAAKQQLIFLAAVDRNRWLYEEPALGKAIYRYNACWLPLLAKHSESATFEGPLVVPLDCEWIWHCHRLNPVRYNSDCL ELFGSVLDNSHVVSSVQRTCTRKTEEIWNKLYPDEPYCLDMTRGNEKSVTVEKYSKYDLVSAVKRQVPFTYQVSRPHMSHHVFLEEAVARYKGFLHLIKR NQERSINAFCVPTYDIDLIWHTHQLHPVSYSKDLGALLGKILEHDDTDSDRTKGKKLDVGFFATTKQWEDTFGSRYWKAGAMYRGAAPSPVTFNPSALTL SSKESKQLKNHHDIIQLPQQKIVEVVMLEIVGVKNLPQGHKGSLHVMFSKNQPDQFFNVKRKLKIQSESGEKQVVSFQCEAEGDLLLELVSHSPSKLPIA KELKTLGTTLLSLQNLLSPISRLSEETWLELLPVSREMSSSPICLRVSISLTVPAQAPYVLDLTHPRSLSKGSCFFPLPGRVQHAKSLMDITSETNGETM SLQMRDSKKTKENDKGAPMKQVILLMESGEVQTVAEFSNSQWSLMDLQWSLRLKSKSNKDGLLAEMIGCRMVRIFQGRKLDFESKLWEKRSCEQYLMTAV EFSAEHPEYESFTLNLKQSNEKNEILKPTTLLHKEQPGGGCGSGGRRGAGCGGGCGGSMAENGSGCGSGCGGGCGGCGGGMLKSSSGCGTGCGGCGGGDT VVANSAIEGGPGELTVCAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22660			Protein of unknown function (d...		Lus10004273 [exp]	0	1
AT4G12350	MYB	ATMYB42	myb domain protein 42 (.1)		Lus10024589 [exp]	2.8	0.9566
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	4.0	0.9482
					Lus10027034 [exp]	4.1	0.9194
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10038913 [exp]	5.8	0.9516
AT4G01580	B3		AP2/B3-like transcriptional fa...		Lus10000750 [exp]	8.1	0.8923
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10015646 [exp]	8.8	0.9462
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	9.2	0.9467
					Lus10017305 [exp]	12.0	0.9487
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10038781 [exp]	14.4	0.9336
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	18.5	0.9325

Compare expression of checked genes

Lus10004273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.