Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55100 247 / 4e-72 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) AT5G13580 244 / 1e-70 ABCG6 ATP-binding cassette G6, ABC-2 type transporter family protein (.1) AT2G37360 241 / 6e-69 ABCG2 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) AT3G55090 240 / 7e-69 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT3G55110 239 / 7e-69 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT2G39350 236 / 2e-67 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55130 234 / 9e-67 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G53510 225 / 1e-63 ABCG20 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) AT1G31770 172 / 3e-45 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT3G52310 170 / 3e-44 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019238 [exp] 1279 / 0 AT2G37360 296 / 1e-90 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10033663 [exp] 461 / 1e-153 AT2G39350 454 / 6e-151 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10017707 [exp] 451 / 3e-149 AT2G37360 456 / 6e-151 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10039859 [exp] 317 / 1e-96 AT2G37360 319 / 5e-97 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10018624 [exp] 315 / 1e-95 AT2G37360 316 / 7e-96 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 229 / 5e-65 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 225 / 3e-63 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10033315 [exp] 168 / 1e-45 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034775 [exp] 171 / 6e-45 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004800 [exp] 942 / 0 AT3G55100 266 / 5e-79 ATP-binding cassette G17, ABC-2 type transporter family protein (.1) Potri.012G045100 [exp] 307 / 6e-93 AT3G55130 270 / 3e-79 ATP-binding cassette G19, white-brown complex homolog 19 (.1) Potri.015G036100 [exp] 304 / 9e-92 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 238 / 5e-68 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 238 / 6e-68 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Potri.002G156900 [exp] 237 / 6e-68 AT3G53510 950 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 234 / 1e-66 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.006G215100 [exp] 233 / 2e-66 AT3G53510 860 / 0.0 ATP-binding cassette G20, ABC-2 type transporter family protein (.1) Potri.004G236500 [exp] 174 / 6e-46 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 172 / 2e-45 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10004274 pacid=23163587 polypeptide=Lus10004274 locus=Lus10004274.g ID=Lus10004274.BGIv1.0 annot-version=v1.0 ATGGCTGACGAAACCGTGATCAACATCAAGCCATCCGCGTCGAATTTCACAGGCGGGCTCGAGTTCACCGACCTGACGTACTCGGTGACCACCAAGAAGA AAGCTGACGATGGGAAATGGGTGAGCAGAGAGGTTGACCTGTTGAATAAGATCACTGGGTACGCACCGAAGGGATGCGTTACTGCGGTTATGGGCCCGAG TGGGGCCGGGAAATCGACGTTGCTTGATGGCTTAGCTGGCAGGATTGCTAGTGGAAGCTTGAAGGGGAGAGTGTCGCTGGATGGTAGAGTTATGAGCCCT GGTTTGATCAAGAGGACTTCTGCTTACGTTATGCAGGACGATCGGCTGTTTCCGATGCTGACGGTTTACGAGACGTTAATGTTCGCTGCTGATTTCCGGC TGGGTGCGATCCCGGTGTTTGAGAAGAGGGATCGCGTCGAGAAGCTCATCGAACAGCTTGGCCTCTCTTCTACCAGGAACACTTACATCGGAGACGAAGG GACCAGAGGAGTATCAGGAGGTGAACGGAGACGAGTCTCGATCGGAGTAGACATCATCCACGGTCCGTCTCTCCTCTTCCTCGATGAGCCAACTTCAGGG CTCGATTCAACCAGCGCACACAGCGTGATCGACAAAGTTCGAGGCATTGCCGAGTCAGGAAGCACAGTGATCTTGACAATTCATCAGCCTTCTTCAAGAA TCCTACTTCTCCTCGACCATCTCATCATCTTAGCCAGAGGGCAGCTGATGTACCAAGGCTCTCCGAGAGACGTGGCTCTCCATTTGGGCAGGATGGGGAA GAAAGTCCCGAAAGGCGAGAATTCGATCGAGTTCCTGATCGACATCATCCAGGAGTATGATCAGTCTGATATTGGAGTTCAGCCTCTTGCTGAGTTCGCT AGGATCGGAGTGAAACCGCCGCCTTTGTCGGAAGAGGACGGTCCCATTTACAGTGTGGCTCCGTCTCCTCTGTTTCCGCCGAGGAGCAGTAAAGGTGGTG ACAAACATGGCCGAATTAATGGGAAGCGGCATCTTCATCTTGGTGATAATGATGACTTTGATCGGAGTATCAGAAGTCCGTCGTGGAGTGGGACTCCGAG TAGAATCATGGCGAATCTCAAGTTCACTCCTTCTCGTCAGAGCAAAGAGACGAAAACTCATAATCCAATCAGTTCTTCCCCTGGCTACATCTACTCCAGC GAGATCCTCCCAAGCACGCCAACCCCTCACAGCAGCGACTACACAGTCAACGAGAACGACTACCTAACACCGACCGCTGCAATAATCTCCCGCCACAACC CCTCCGGCGGCCATGGATCGGCCAAATTCGCCAACTCCTTCCTCCATGAGACCGGGATCTTAATCCGCCGCAACTTCAAGAACATCCGCCGCACCCCGGA GCTCTTCCTCTCCCGCCTGATGGTCCTCACCGTGATGGGATTCATGATGGCCACAATGTTCATGAACCCCAAACCCGACCTCCAAGGGATCACCAACCGC CTCAGCTTCATGATCTTCACTGTCTGCCTGTTCTTCTTCTCCTCCAACGATGCCGTCCCGGCCTTCATCCAGGAGCGGTTTATCTTCGTCAGGGAGACTT CTCACAACGCCTACAGAGCATCTTCGTACACGATCGCCGGAGTAATCACTTACCTCCCGTTCCTCCTCCTCCAATCGGGCGTCTACGCCGCGATTGTCTG GAATGCTCTCAAGCTCCGAGGACCTTTCCATTACTTCCTCCTCGTCCTTTACGTCTCGCTCCTCTCGACGAATTCCTTCGTCGTCTTCGTCAGCTCTGTT GTCCCGAATTACATTCTCGGATACGCATCGGTGATCGCTTTCACGGCGCTGTTCTTTCTGTTCTGTGGATACTTTTTAAACAGCGCTGAGATTCCTGCGT ACTGGAAGTGGATGAACAAGATCTCGACGATTACGTACCCGTACGAGGGGCTGTTGATGAATCAGTACCAGACGGATGAGGTGTTTGGGACGACGAAGGA AGGGCCGATCACCGGATTTGGGATTCTCGATTCGCTGAATATTAGCGGGGACGAATCGGAGAAGTGGAAGAGGATTGCTGTGATGCTTGGATGGGCTGCG TTCTACAGGGTGTTGTTTTACATTGTTCTTCGATTCTTCTCCAAGAACCAGAGATCGTAG
AA sequence Show only first row Show all	>Lus10004274 pacid=23163587 polypeptide=Lus10004274 locus=Lus10004274.g ID=Lus10004274.BGIv1.0 annot-version=v1.0 MADETVINIKPSASNFTGGLEFTDLTYSVTTKKKADDGKWVSREVDLLNKITGYAPKGCVTAVMGPSGAGKSTLLDGLAGRIASGSLKGRVSLDGRVMSP GLIKRTSAYVMQDDRLFPMLTVYETLMFAADFRLGAIPVFEKRDRVEKLIEQLGLSSTRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSG LDSTSAHSVIDKVRGIAESGSTVILTIHQPSSRILLLLDHLIILARGQLMYQGSPRDVALHLGRMGKKVPKGENSIEFLIDIIQEYDQSDIGVQPLAEFA RIGVKPPPLSEEDGPIYSVAPSPLFPPRSSKGGDKHGRINGKRHLHLGDNDDFDRSIRSPSWSGTPSRIMANLKFTPSRQSKETKTHNPISSSPGYIYSS EILPSTPTPHSSDYTVNENDYLTPTAAIISRHNPSGGHGSAKFANSFLHETGILIRRNFKNIRRTPELFLSRLMVLTVMGFMMATMFMNPKPDLQGITNR LSFMIFTVCLFFFSSNDAVPAFIQERFIFVRETSHNAYRASSYTIAGVITYLPFLLLQSGVYAAIVWNALKLRGPFHYFLLVLYVSLLSTNSFVVFVSSV VPNYILGYASVIAFTALFFLFCGYFLNSAEIPAYWKWMNKISTITYPYEGLLMNQYQTDEVFGTTKEGPITGFGILDSLNISGDESEKWKRIAVMLGWAA FYRVLFYIVLRFFSKNQRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10004274 [exp]	0	1
AT2G28420		GLYI8	glyoxylase I 8, Lactoylglutath...		Lus10039579 [exp]	1.4	0.8816
AT1G71820		SEC6	SEC6 (.1.2)		Lus10036425 [exp]	2.0	0.7384
AT2G37470			Histone superfamily protein (....		Lus10006484 [exp]	7.9	0.7024
AT1G52820			2-oxoglutarate (2OG) and Fe(II...		Lus10005516 [exp]	13.0	0.7066
AT3G28470	MYB	TDF1, ATMYB35	DEFECTIVE IN MERISTEM DEVELOPM...		Lus10039462 [exp]	19.1	0.8412
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10017176 [exp]	26.2	0.6621
AT1G09600			Protein kinase superfamily pro...		Lus10028890 [exp]	29.2	0.6544
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10016605 [exp]	33.2	0.7153
					Lus10035120 [exp]	48.0	0.6974
AT1G40087			Plant transposase (Ptta/En/Spm...		Lus10007402 [exp]	51.3	0.6820

Compare expression of checked genes

Lus10004274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.