Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37050 370 / 1e-113 Leucine-rich repeat protein kinase family protein (.1.2.3) AT1G67720 313 / 1e-92 Leucine-rich repeat protein kinase family protein (.1) AT1G51805 299 / 7e-88 Leucine-rich repeat protein kinase family protein (.1.2) AT1G05700 296 / 6e-87 Leucine-rich repeat transmembrane protein kinase protein (.1) AT3G21340 295 / 2e-86 Leucine-rich repeat protein kinase family protein (.1) AT4G29990 293 / 8e-86 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G49100 286 / 3e-83 Leucine-rich repeat protein kinase family protein (.1) AT3G46350 286 / 4e-83 Leucine-rich repeat protein kinase family protein (.1) AT1G51850 283 / 4e-82 Leucine-rich repeat protein kinase family protein (.1) AT1G51810 280 / 4e-82 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019237 [exp] 1460 / 0 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10019907 [exp] 345 / 3e-104 AT2G37050 1337 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10036935 [exp] 329 / 2e-98 AT1G67720 1303 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015057 [exp] 324 / 3e-96 AT2G37050 1316 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10037051 [exp] 318 / 2e-92 AT1G67720 1293 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 273 / 3e-78 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 258 / 2e-73 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038174 [exp] 223 / 9e-63 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10015484 [exp] 209 / 2e-57 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004700 [exp] 810 / 0 AT2G37050 466 / 2e-149 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.006G132100 [exp] 357 / 4e-109 AT2G37050 1317 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.016G084900 [exp] 344 / 3e-104 AT2G37050 1276 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2.3) Potri.008G181200 [exp] 344 / 5e-104 AT1G67720 1339 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G052800 [exp] 340 / 1e-102 AT1G67720 1330 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G242700 [exp] 286 / 5e-83 AT5G48740 1110 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G094600 [exp] 243 / 9e-68 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094300 [exp] 239 / 2e-66 AT4G29990 628 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094200 [exp] 203 / 1e-56 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.008G110300 [exp] 196 / 3e-53 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10004275 pacid=23163623 polypeptide=Lus10004275 locus=Lus10004275.g ID=Lus10004275.BGIv1.0 annot-version=v1.0 ATGATGGGGATTGGAGGAAGCCATAGCTGGAGGTTGAGGAGTGTTGACTCTTTGATTCTTTGCCTGCTGATCCTATTTGTTCCATCAGCTCCTGCACAAC AAGAAGGTTTCATAAGCATAAATTGCTGCGGCGAACAAAGGCAGATAGATAGCTCCTCAATAGCTTGGATATCAGATGAGCAATGGTACCCAGACAAAAC AGGCTGCCTAGCCGCCACGTCAGAGAGCTACACAGGCAATGATAAAGTTAGGTTTTTCGACATCGAAAACTCGGGGAAGAGATTCTACACCTTGGCAACG ACTCAAGACAGTGACTACCTGCTAAGGGGTACGTTCCCTTCCGGTAGATCCGCAGGATCCCTGGGGCCCACTACCTTTGATGTCTTGGTTGGTGTCACGC CGATAAGTTTGGTGGACTCGTCGGGCAAATCAACGGTGGAAGCCATGTTCAGAGCAGCTGAGCAGCACGTAGATTTCTGTTTGGTGCATGAAACAGGAGA TCCGTACATTTCGCAGCTTGAACTGAGGCCTCTGCGCGATTCGAGGTACCTTGATGGAAGAGAAAGAGACTCTACTGTTCTGAAGTTGGTGGACAGAGTG GACCTCGGGAACATGGGGATTCCAATCAGGTTCCCTGATGATCCACAGGACAGAATTTGGTCGAGTCCTGACCGGGGAAGAGTAAATTTGTCCACGATGA CCACAATCAACAATACGATCACCAATCCTGCTTCAAAAGTGCCTCAAAGAGTTCTTGAAACTGCAACAACAAATGAAACTCGTCTGCAGTTCTTATATGC TGATCTCGAGATAAGGGATTCCAACTATACCATTTTCCTCTACTTTTTTGAGCTAGATGACAGTGTGAGACCTGGCCAAAGAGTGTTTGACATCTACATC AACAATGAAGAGCAGCAAACGAGTTTTGACATACGGAAAAATGGGTCAAACTACAGCGAAGTTGCTCTCAATTTCACTGCGAATGGGTATCTAAACTTGA CCTTAAGCAGGGTCAACGACAAATCCAAGTATGGACCAATCTTAAATGCATATGAGATCGTGAAGGTTTATCAATGGATCCAAGGAACTAACCAAAGAGA TGTGAGAGTGATGGAAAAGGTGAAAGATGGGCTGATGGAGAAAAACAAAGGAAATAAGAAGCTTGAAAGCTGGTCAGGAGATCCATGTCAGCCTTCTTCA TGGGACGGTATTGCTTGCCGTACCAGTAATGGATCCACTGTCATCACTAAGCTGGATATTTCATCAAGTCGACTGCAAGGGCCGATTCCAACCACGACTG CACAGCTAATCTACCTGAAGGAATTAAATCTCAGCAACAATCACTTCTCTGGCAACATCCCAGAATTCCCAAGGTCCTCAATGTTGATGTCAGTGGATCT ACGCAACAATGCCCTTTCCAGAAATCTTCCAGATTCTTTGGTAAAACTGCCACAATTAAAAGAATTATTCTATGGATGTAATGCTCATCTCAGCTCCACG TATAATCTTTCAAGACTCGCTACAGACTCCGGGAGATGCATCAGGCCAGGATCTAGAATGAAACAAAACCTTGTTCGAATAGTTGGTGTGTGTGGATCTT TTCTAATAGCAGTAGCAGTTGTAGCATCTTGTGTTTGGTTGTACAGAAGAAAATTTGGAGCTGGGAGAAAGATTAACGCGAAGAAACTCCCGACGTCTAA GGCCAGTTCTAAATCACAGCCAACAACTAACCCCCATTTAGTCATGGTTGCTCAGGGCAGTTTTCTCAATATCCACGAAAGACGAGGATCCCCCTACGGC GCCACGACAGACGAGGATCCCCTTAGGACGATAAATATTCAAATGTTCACTCTAAATTACATTGGCCATGCAACACAAAAGTACAAGACCTTGATAGGTG AAGGAGGGTTTGGGGCCGTTTACCGTGGCACACTACCTGATGGTACAGAAGTAGCAGTGAAGGTTCGATCCTCTACCTCAACGCAGGGCACCAAGGAATT CGAGAATGAGCTAAATCTACTTTCAGCAATCCAGCATGAAAACCTAGTCCGTTTGCTTGGTTACTGTAGCGAAAATGACCAGCAAATCTTGGTTTATCCA TTTATGTCAAATGGCTCTCTACAAGATCGGCTTTACGGAGAAGCAGCAAAAAGAAAAACTCTGGACTGGCCAACTAGACTCTCTATTGCTCTTGGAGCTG CCCGAGGTTTGACATACCTGCACACTTTTGCTGAGCGTTGTGTAATACATAGAGATGTGAAGTCCAGTAACATACTTCTAGATCACAGCATGAATGCCAA GGTAGCAGACTTCGGATTCTCAAAGTATGCTCCACAAGAAGGAGATAGTGGTGTCTCTCTTGAAGTCAGGGGCACAGCTGGATACTTGGACCCTGACAGA GGAGTGGGGGTGGCGTTAGCATGCATTGAAACCTCCTCGGCTTACCGTCCATGCATGGCTGATATCGTGAGAGAGTTGGAGGATGCACTGATTATAGAGA ACAATGCATCAGAATATATGAAGTCCATCGACAGCGCAGGAACTTACAGCTTGGGAGGGTCACACCGCTTCTCTATAACAATGGATAAGAAGCCTTCTAT TCTCCCAGCACCTCCTCCTACGCCGCCCGAACCTTCACCAGACAACGTACAAGCAATGGCTCCAGTGGCACCAAGATAG
AA sequence Show only first row Show all	>Lus10004275 pacid=23163623 polypeptide=Lus10004275 locus=Lus10004275.g ID=Lus10004275.BGIv1.0 annot-version=v1.0 MMGIGGSHSWRLRSVDSLILCLLILFVPSAPAQQEGFISINCCGEQRQIDSSSIAWISDEQWYPDKTGCLAATSESYTGNDKVRFFDIENSGKRFYTLAT TQDSDYLLRGTFPSGRSAGSLGPTTFDVLVGVTPISLVDSSGKSTVEAMFRAAEQHVDFCLVHETGDPYISQLELRPLRDSRYLDGRERDSTVLKLVDRV DLGNMGIPIRFPDDPQDRIWSSPDRGRVNLSTMTTINNTITNPASKVPQRVLETATTNETRLQFLYADLEIRDSNYTIFLYFFELDDSVRPGQRVFDIYI NNEEQQTSFDIRKNGSNYSEVALNFTANGYLNLTLSRVNDKSKYGPILNAYEIVKVYQWIQGTNQRDVRVMEKVKDGLMEKNKGNKKLESWSGDPCQPSS WDGIACRTSNGSTVITKLDISSSRLQGPIPTTTAQLIYLKELNLSNNHFSGNIPEFPRSSMLMSVDLRNNALSRNLPDSLVKLPQLKELFYGCNAHLSST YNLSRLATDSGRCIRPGSRMKQNLVRIVGVCGSFLIAVAVVASCVWLYRRKFGAGRKINAKKLPTSKASSKSQPTTNPHLVMVAQGSFLNIHERRGSPYG ATTDEDPLRTINIQMFTLNYIGHATQKYKTLIGEGGFGAVYRGTLPDGTEVAVKVRSSTSTQGTKEFENELNLLSAIQHENLVRLLGYCSENDQQILVYP FMSNGSLQDRLYGEAAKRKTLDWPTRLSIALGAARGLTYLHTFAERCVIHRDVKSSNILLDHSMNAKVADFGFSKYAPQEGDSGVSLEVRGTAGYLDPDR GVGVALACIETSSAYRPCMADIVRELEDALIIENNASEYMKSIDSAGTYSLGGSHRFSITMDKKPSILPAPPPTPPEPSPDNVQAMAPVAPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	0	1
AT2G37050			Leucine-rich repeat protein ki...		Lus10019237 [exp]	1.0	0.9848
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	1.4	0.9814
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10033867 [exp]	2.0	0.9759
AT5G23810		AAP7	amino acid permease 7 (.1.2)		Lus10010580 [exp]	2.4	0.9762
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10029684 [exp]	3.7	0.9672
AT3G14470			NB-ARC domain-containing disea...		Lus10011278 [exp]	4.1	0.9649
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	4.5	0.9754
					Lus10008301 [exp]	4.9	0.9674
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10014755 [exp]	5.5	0.9683
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	5.5	0.9751

Compare expression of checked genes

Lus10004275 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.