Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65620 1154 / 0 Zincin-like metalloproteases family protein (.1) AT5G10540 1148 / 0 Zincin-like metalloproteases family protein (.1) AT1G67690 183 / 3e-48 Zincin-like metalloproteases family protein (.1) AT5G51540 169 / 1e-43 Zincin-like metalloproteases family protein (.1) AT2G22640 122 / 5e-33 ATBRK1, BRK1, HSPC300 BRICK1, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019236 [exp] 1386 / 0 AT5G65620 1073 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10037058 [exp] 197 / 9e-53 AT1G67690 858 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10036925 [exp] 178 / 2e-46 AT1G67690 826 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031715 [exp] 167 / 8e-43 AT5G51540 1017 / 0.0 Zincin-like metalloproteases family protein (.1) Lus10031136 [exp] 84 / 2e-16 AT5G51540 917 / 0.0 Zincin-like metalloproteases family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G010100 [exp] 1172 / 0 AT5G65620 1199 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.007G004600 [exp] 1155 / 0 AT5G65620 1196 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.010G054466 [exp] 186 / 3e-49 AT1G67690 850 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.009G151300 [exp] 169 / 2e-47 AT5G65620 187 / 1e-54 Zincin-like metalloproteases family protein (.1) Potri.015G129300 [exp] 160 / 1e-40 AT5G51540 1015 / 0.0 Zincin-like metalloproteases family protein (.1) Potri.014G010000 [exp] 107 / 2e-27 AT2G22640 81 / 2e-21 BRICK1, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01432 [flax] [poplar] Peptidase_M3 Peptidase family M3
Representative CDS sequence Show only first row Show all	>Lus10004276 pacid=23163622 polypeptide=Lus10004276 locus=Lus10004276.g ID=Lus10004276.BGIv1.0 annot-version=v1.0 ATGGCCTCCGCCATCTCCGCCGTCGAGAATCCTCTTCTCAAGGACTTCGTCTTCCCTCCGTTCGATTCCGTCCACGCCGATCATGTCCGCCCCGGTATCC GCGCCTTGCTCAAGCAGCTCGAGAGTGAATTGGAGGAACTGGAGAAGAACGTGGAGCCGTCGTGGCCGAAGCTAGTGGAGCCGCTGGAGAAGATCTTTGA TAAGCTGGCTGTTGTTTGGGGGATGGTGAATCATCTCAAAACTGTTAAGGATACTGCTGAGCTCCGAGCTGCTATAGAGGAAGTTCAGCCAGAGAAAGTG AAGTTTCAGCTCAGATTAGGACAGAGTAAGCCGATTTACAATGCGTTTAAGGCTATTCAAGAGTCTCCCGACTGGCAGCATCTGAGTGGTGCTAGGAGAA GAATAGTCGAAGCTCAAATAAAGGAAGCGGTTCTCAATGGTGTTGCTCTGGAAGATGACAAAAGAGAAGAGTTTAACAAAGTCGAGCAGGAACTGGAAAG GCTGTCTCAAAAGTTTGACGAGAATGTGTTGGATGCCACCAAGAAGTTTGAAAAGCTTGTCACAGATAAGAAAGAAATTGAAGGATTGCCAGCTACGGCA CTTGGGTTGGCTGCTCAGTCTGCCGTTTCTAAGGTATCATGTGCCGTTTCTAAGGGTCACCCTGATGCAACGTCCGAGGATGGACCCTGGATTATTACAC TGGATGGACCCAGTTTTACGTCTGTCATGCAACATGCTAAAAACCGTGGTTTGCGTGAAGAATTATATCGTGCATATGTAACACGAGCCTCAGGTGGAGA TCTTGATAACTCTCCCATTATTGATCAGATATTAAAGCTCAGACTGGAAAAGGCTAAGCTCCTTGGTTATAAGAACTATGCTGAGGTAAGCATGGCAACC AAAATGGCCACCGTTGAGAAAGCACTAGAGCTTCTGGAAAAGTTGCGATCAGCTTCGTGGGATGCTGCAGTTAGAGATTTGGAAGACCTTAGATACTTTG CAAAAGCCCAAGGTGCAGCAGAAGCAGATGACTTGAAACACTGGGACATGAGCTTTTGGTCAGAGAGGCTGCGTGAGTCTAAATATGACATCAATGAGGA AGAGTTACGGCCTTATTTCTCATTGCCAAAGGTTATGGATGGCCTTTTCAATCTTGCCAACAAACTTTTTGGCATTACCATTGAAGCAGCTGATGGCCTT GCTCCTGTTTGGAACAAAGATGTGAGGTTCTATTGCGTCAAGGACTCATCAGGCTCTCCTGTTGCATACTTCTATTTTGATCCTTATTCACGTCCATCTG AGAAAAGGGGAGGTGCATGGATGGATGAGGTTGTTGGTCGAAGCCGTGTTCTGTCTAGCAATGGTACTAGCCCGAGGTTACCTGTTGCCCATATGGTCTG CAATCAAACACCACCTGTTGGTGAAAAACCAAGTCTCATGACGTTCCGCGAGGTTGAAACAGTCTTCCATGAGTTTGGCCATGCTCTTCAGCACATGCTT ACTAAGGTGGATGAGGGTCTTGTTGCTGGAATCAGGGGAGTTGAATGGGATGCTGTGGAACTACCTTCGCAATTTATGGAAAATTGGTGCTATCACAGAG AAACCTTGATGGGCATTGCCAAACACTTTGAAACCGGTGAAAACTTCCCGGAAGAGGTATTCTCGAAGCTTGTTGCTGCACGAACATATAGGGCGGGTTC CCTTAGCCTTCGGCAGTTGAAATTCGCAACTCTGGATTTGGAATTGCACTTAAATTATGTACCAGGAGGATCCGAATCTATATATGATGTGGATCAAAGA GTCTCCAAGCGCACACAAATCATCCCCCCATTGCCAGAGGACAGATTCCTGTGTGGCGGATATGCAGCTGGGTACTATAGTTATAAGTGGGCTGAGGTTT TGTCTGCAGATGCTTTCTCAGCTTTCGAAGATGCCGGATTAGATGACAACAAGGCTGTTGAAGAGACAGGACGCAAGTTCCGGGAGACTGTCCTCGCTCT CGGTGGTGGCAAAGCACCGCTAGAGGTGTTTGTGGAGTTCCGAGGGCGCGAACCTTCACCAGAGGCTCTACTACGCCACAACGCAGACCACTCACGAACA ACCAGGGAAAATAAAACAAATTCAAGTCAGATCAGTAGCAGCAGACGTAAAGAAACAGCATCATCAGTTCATCATCATCATTCAGCTGCAGCAATCCGGT ATCTCCATTCCTTCATCCTGGAAATCGGATTCTCAACAAGTATGGCGCGAGCTGGAGGGATCACGAACGCCGTCAACGTAGGAATCGCAGTCCAAGCTGA TTGGGAGAATCGCGAGTTCATCTCTCACATCTCTCTCAACATCCGTCGCCTCTTCGATTTCCTCCTCCAATTCGGTAAAACAACCTCTTCGATGATTCTC CTGCTTAACGTTGTTCCTCTGGTCGCGTCTTTTGAATTTTGTTCTTGCATCTCTCTCCCTTCCTCAGAAGCTACTACCAAATCCAAACTGTCGTCGCTGA ACGAGAAGCTTGATACCTTGGAGCGTCGTCTCGAGCTGCTTGAAGTCCAAGTCGGTACTGCTACGGCCAATCCTTCTCTTTTCAATACTTGA
AA sequence Show only first row Show all	>Lus10004276 pacid=23163622 polypeptide=Lus10004276 locus=Lus10004276.g ID=Lus10004276.BGIv1.0 annot-version=v1.0 MASAISAVENPLLKDFVFPPFDSVHADHVRPGIRALLKQLESELEELEKNVEPSWPKLVEPLEKIFDKLAVVWGMVNHLKTVKDTAELRAAIEEVQPEKV KFQLRLGQSKPIYNAFKAIQESPDWQHLSGARRRIVEAQIKEAVLNGVALEDDKREEFNKVEQELERLSQKFDENVLDATKKFEKLVTDKKEIEGLPATA LGLAAQSAVSKVSCAVSKGHPDATSEDGPWIITLDGPSFTSVMQHAKNRGLREELYRAYVTRASGGDLDNSPIIDQILKLRLEKAKLLGYKNYAEVSMAT KMATVEKALELLEKLRSASWDAAVRDLEDLRYFAKAQGAAEADDLKHWDMSFWSERLRESKYDINEEELRPYFSLPKVMDGLFNLANKLFGITIEAADGL APVWNKDVRFYCVKDSSGSPVAYFYFDPYSRPSEKRGGAWMDEVVGRSRVLSSNGTSPRLPVAHMVCNQTPPVGEKPSLMTFREVETVFHEFGHALQHML TKVDEGLVAGIRGVEWDAVELPSQFMENWCYHRETLMGIAKHFETGENFPEEVFSKLVAARTYRAGSLSLRQLKFATLDLELHLNYVPGGSESIYDVDQR VSKRTQIIPPLPEDRFLCGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDNKAVEETGRKFRETVLALGGGKAPLEVFVEFRGREPSPEALLRHNADHSRT TRENKTNSSQISSSRRKETASSVHHHHSAAAIRYLHSFILEIGFSTSMARAGGITNAVNVGIAVQADWENREFISHISLNIRRLFDFLLQFGKTTSSMIL LLNVVPLVASFEFCSCISLPSSEATTKSKLSSLNEKLDTLERRLELLEVQVGTATANPSLFNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10540			Zincin-like metalloproteases f...		Lus10004276 [exp]	0	1
AT5G37510		CI76, EMB1467	embryo defective 1467, NADH-ub...		Lus10000183 [exp]	5.1	0.8934
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10024912 [exp]	5.7	0.8954
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034495 [exp]	10.8	0.8811
AT1G01090		PDH-E1 ALPHA, P...	pyruvate dehydrogenase E1 alph...		Lus10030197 [exp]	11.0	0.8402
AT3G10370		SDP6	SUGAR-DEPENDENT 6, FAD-depende...		Lus10007932 [exp]	11.6	0.8771
AT4G34980		SLP2	subtilisin-like serine proteas...		Lus10034496 [exp]	12.5	0.8584
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10022168 [exp]	14.0	0.8571
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031201 [exp]	14.1	0.8669
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	14.1	0.8619
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	15.4	0.8928

Compare expression of checked genes

Lus10004276 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.