Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 656 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 553 / 0 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 348 / 9e-111 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 335 / 1e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT5G06740 314 / 4e-98 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 303 / 2e-93 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 297 / 4e-91 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 289 / 9e-88 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 287 / 2e-87 Concanavalin A-like lectin protein kinase family protein (.1) AT5G60320 275 / 4e-83 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029555 [exp] 870 / 0 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016836 [exp] 580 / 0 AT3G16810 761 / 0.0 pumilio 24 (.1) Lus10029554 [exp] 580 / 0 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 566 / 0 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 552 / 0 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004279 [exp] 493 / 2e-166 AT5G10530 578 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 484 / 1e-162 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020452 [exp] 468 / 4e-157 AT5G10530 510 / 2e-173 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007077 [exp] 463 / 1e-152 AT5G10530 511 / 4e-171 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G094700 [exp] 822 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 696 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004400 [exp] 664 / 0 AT5G10530 738 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 662 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 551 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 491 / 2e-167 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 404 / 7e-132 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 404 / 7e-132 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 402 / 5e-131 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 399 / 7e-131 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10004277 pacid=23163613 polypeptide=Lus10004277 locus=Lus10004277.g ID=Lus10004277.BGIv1.0 annot-version=v1.0 ATGTTCCCACTCCTCCTCTTCCTCCTCATCCCTTCCATAGATGCTCTCTCCTTCGAGAAATCGCGATTCGACCCAATCGACGCAACCATGGTCTACGAGG GGGGCGCATCCTCGACGGTAGGCACGGTCGAGTTCAACAGCGACACGTACATGTGTCAGGTCGGACACGCCACATACTCGAGGAAGGTCCCCATCTGGGA TCCCGACACTCGAAACCTGGCCGATTTAGAGTCGAGGTTCACGTTCTACATCGACCCGCAGGGTAGGCCGACTTACGCGGCCGGATTCGCCTTCTTCCTG GCCCCGCCGGATTTCCACATCCCTCCCAATTCCGCGGGCGGGTTCCTGGGGTTGTACAACCTGACCACATCCAATTCGGCAAGGAACAGTATCGTCCATG TCGAATTCGACACTTTTCCTAACCCGGAATGGGACCCTCCTTTCCAGCACGTCGGGATCAATAATAATTCGGTGTTTTCGGCCAATTCGACGTTCTGGAA TGCCACGCTACATGCGGGGGAGACCGCGGATGTCAGGATCGCTTACGATTCGGCTTCCAGGAACCTGAGCGTTTCATGGAAGTATCAGGATTCTGATACT AGTACTATTAATAATGGTACTAGTACTAGTCTTTCTTACATCGTTGACTTGAGAGACGTCCTGCCTCCTTTTGTCACGGTCGGCTTCAGTGCCTCGACTA GCAACGTCCTCGAGAGGAACGTTCTCCAGTCGTGGCAATTCAGATCGAGTCTCGAAATCAAAGAATCAAACAGTAGCGATCGCAGGAAGATAGTTGCGAT TGTTGCTCCGATTCTCGCTAGTGCAGCTCTCATTTCCGCGTTGACTTTTGTTTTTCTATGGAAGAGGAGGCAGAGGATGAAGCAGAGGAAACAAAAAATG GAGGAGAAGACGTGGATGGATATGACCTCGATTAACGACGAGCTCGAACGAGGAGCAGGGCCGAAGAGGTATTCATACAGCAATCTCGCTTCTGCAACGA ACAACTTCTCGAAAGAGAGGAAGCTTGGTGAAGGAGGGTTCGGAGAGGTGTACCGAGGCTACTTGAACGATTCCGGATTGTTGGTGGCCGTTAAAAAGAT CTCGAGAGGCTCTAAGCAAGGACGGAAAGAGTACGTAACTGAGGTGAAGGTGATCAGCATGTTGAGGCACCGGAATCTCGTGCAGTTAATCGGTTGGTGC CACGATCGAGGCGAGTTCTTGCTCGTATACGAGTTCATGCCAAACGGTAGCCTGGACTCTCACCTCTTCGGTAGGAAGCCCTCCCTCGGTTGGCCTGTCA GGTACCGAATTGCGGTGGGTTTAGCATCCGCAATCAGGTACCTGCACGAGGAAGGCGACCAGTGCGTGATCCACCGCGATGTCAAATCGAGCAACATCAT GTTGGACTCGAGCTTCACCGTCAAGCTCGGCGATTTCGGACTAGCTAGGTTGATGGATCACGAAATGGGCCTGCAAACGACAGGTTTGGCCGGAACGCTC GGATACCTCGCTCCGGAGTACATAACAACAGGGCGGGCGAGCAAGGAGTCTGATGTGTACAGCTTCGGAGTTGTTTGCATCGAAATCGCCACAGGAAGGA AAGCTTCCGATCCGGTTTCGCGGAAGACTGGTGACAGCTTGGTCGAATGGGTCTGGGACCTTTATGGAACTGGAAACTTGATCATGGCCGTTGACGAGAA ACTAAGTACCGGATACGACGAAGGCGAGCTAGGGAGACTGATAACCGTCGGATTATGGTGCGCTCACCCCGATCGCAACGCGAGACCTTCGATAAAGCAA GTGATTCAGGTTCTGAATTCCGAAGCTCCGTTGCCTCGTCTTCCAGATAAGATGCCGGTACCTATGTACCAGGCTGCTGTTGCTACACAGTCTGTTACTT CCAGTGATGCTTCGGGCTCGAATACGTTGACTTCAAGCATTATGGGCGGTCGTTGA
AA sequence Show only first row Show all	>Lus10004277 pacid=23163613 polypeptide=Lus10004277 locus=Lus10004277.g ID=Lus10004277.BGIv1.0 annot-version=v1.0 MFPLLLFLLIPSIDALSFEKSRFDPIDATMVYEGGASSTVGTVEFNSDTYMCQVGHATYSRKVPIWDPDTRNLADLESRFTFYIDPQGRPTYAAGFAFFL APPDFHIPPNSAGGFLGLYNLTTSNSARNSIVHVEFDTFPNPEWDPPFQHVGINNNSVFSANSTFWNATLHAGETADVRIAYDSASRNLSVSWKYQDSDT STINNGTSTSLSYIVDLRDVLPPFVTVGFSASTSNVLERNVLQSWQFRSSLEIKESNSSDRRKIVAIVAPILASAALISALTFVFLWKRRQRMKQRKQKM EEKTWMDMTSINDELERGAGPKRYSYSNLASATNNFSKERKLGEGGFGEVYRGYLNDSGLLVAVKKISRGSKQGRKEYVTEVKVISMLRHRNLVQLIGWC HDRGEFLLVYEFMPNGSLDSHLFGRKPSLGWPVRYRIAVGLASAIRYLHEEGDQCVIHRDVKSSNIMLDSSFTVKLGDFGLARLMDHEMGLQTTGLAGTL GYLAPEYITTGRASKESDVYSFGVVCIEIATGRKASDPVSRKTGDSLVEWVWDLYGTGNLIMAVDEKLSTGYDEGELGRLITVGLWCAHPDRNARPSIKQ VIQVLNSEAPLPRLPDKMPVPMYQAAVATQSVTSSDASGSNTLTSSIMGGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10004277 [exp]	0	1
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	2.2	0.9545
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016471 [exp]	4.6	0.9439
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	5.0	0.9426
AT1G78780			pathogenesis-related family pr...		Lus10042792 [exp]	6.0	0.9434
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10021102 [exp]	7.5	0.9448
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	7.7	0.9402
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Lus10036437 [exp]	8.5	0.9290
AT5G06740			Concanavalin A-like lectin pro...		Lus10016257 [exp]	8.8	0.9386
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	12.3	0.9357
AT2G17150		NLP1	Plant regulator RWP-RK family ...		Lus10023931 [exp]	13.4	0.9251

Compare expression of checked genes

Lus10004277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.