Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20550 290 / 2e-96 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1) AT2G24410 85 / 1e-20 unknown protein AT5G38840 76 / 8e-15 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 51 / 7e-07 FHA SMAD/FHA domain-containing protein (.1) AT1G34355 44 / 0.0002 FHA ATPS1 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019235 [exp] 452 / 1e-159 AT3G20550 296 / 5e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10005098 [exp] 76 / 9e-15 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 68 / 5e-12 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 55 / 4e-08 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 52 / 3e-07 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420400 [exp] 313 / 2e-104 AT3G20550 298 / 4e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.011G136102 [exp] 248 / 1e-80 AT3G20550 226 / 8e-73 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.004G111500 [exp] 73 / 1e-13 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.006G003100 [exp] 53 / 2e-07 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 52 / 3e-07 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [flax] [poplar] SMAD-FHA PF00498 [flax] [poplar] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Lus10004278 pacid=23163606 polypeptide=Lus10004278 locus=Lus10004278.g ID=Lus10004278.BGIv1.0 annot-version=v1.0 ATGGGCCGGCATTTGTCCAATCACTCACCGTCCCCCGACAGAAGTCGTCGGCGTCGGAGGAGCCCTCCACCTGAAGAAAGGTCTCCAACGCGACATAGAA GTTCCCGTGGCGATACTCGTTCTCCGGCGAGGGAGAAGCGTTCGAGTCGTGCTAGGGATGCCTCTCCACCGGTGAAAGAGAGAAGGTCATCTCAGACGAA ATCCTCCCCCAGGCGTGAAACGTCTGGTTCTCCTATTTCTCCACGTAGTAGAAGACTGAGTCTAGCTGCTGCTGAGAAAGAGCCGGATAGAAGGACGGAT AGGGACCATGGAAGGAATCATGGCAGGGAAAAGGATAGGGCTAGGGACAGAGAGAGTTCAAAGGTGTCTGAGAGGGGTACAAGTAGAGATAGAGTTATAG ATAAGGGAAATAGAGCTGAGAGGAAGGAGAGAAGCCATGTCAGAGATGAAATGGAGGAAAAGCCATCTAGAGTAAGGCATGAACGTTCTGCTTCTCCTCC ATCTGATCGCCGCCAGAGGAGCAGACGGAGGTCTCATTCACCTCAAGCATCGGCTGAGAACAGACAACACGATGAGGTGGTTGATAGAAGGAATGACGAG GATGATTCTGTAGCCAAGATGAAAGCTGCTGAAGAGGCCTTGGAAGCGAAAAAGCAAAAGCCGTCGTTTGAGCTCTCAGGGAAGCTTGCTGCAGAAACAA ATAGAGTTCGAGGTATTACACTGCTGTTCAATGAGCCTCCAGAGGCTCGAAAACCCAATATAAGATGGAGGCTTTATGTTTTCAAGGGCGGCGAAGTGCT AAATGAACCATTATATATACACCGACAGAGCTGTTATCTTTTCGGTAGAGAGAGGAGAGTAGCAGATATCCCAACAGACCACCCATCCTGCAGCAAGCAA CACGCTGTCATTCAGTTTCGGCAAATCGAAACGGAAGAAGATGATGGTACTATATCTAAGCAAGTAAGGCCTTACGTAATGGACCTTGGAAGCACTAACA AAACATTCATTAATGAAAACCCAATTGAGCCTCAGCGTTACTATGAACTTTTCGAAAGAGATACAATTAAATTTGGTAACAGTAGTCGAGAATACGTGTT GTTGCACGAGAACTCATCGGAGGCATGA
AA sequence Show only first row Show all	>Lus10004278 pacid=23163606 polypeptide=Lus10004278 locus=Lus10004278.g ID=Lus10004278.BGIv1.0 annot-version=v1.0 MGRHLSNHSPSPDRSRRRRRSPPPEERSPTRHRSSRGDTRSPAREKRSSRARDASPPVKERRSSQTKSSPRRETSGSPISPRSRRLSLAAAEKEPDRRTD RDHGRNHGREKDRARDRESSKVSERGTSRDRVIDKGNRAERKERSHVRDEMEEKPSRVRHERSASPPSDRRQRSRRRSHSPQASAENRQHDEVVDRRNDE DDSVAKMKAAEEALEAKKQKPSFELSGKLAAETNRVRGITLLFNEPPEARKPNIRWRLYVFKGGEVLNEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQ HAVIQFRQIETEEDDGTISKQVRPYVMDLGSTNKTFINENPIEPQRYYELFERDTIKFGNSSREYVLLHENSSEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10004278 [exp]	0	1
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10009708 [exp]	1.0	0.8812
AT2G06000			Pentatricopeptide repeat (PPR)...		Lus10004533 [exp]	3.2	0.8675
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10043390 [exp]	3.5	0.8341
AT3G57000			nucleolar essential protein-re...		Lus10035222 [exp]	4.2	0.8264
AT1G09010			glycoside hydrolase family 2 p...		Lus10029917 [exp]	4.5	0.8335
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10033487 [exp]	8.9	0.8218
AT3G06660			PAPA-1-like family protein / z...		Lus10016899 [exp]	9.5	0.8251
AT5G15550			Transducin/WD40 repeat-like su...		Lus10032344 [exp]	13.0	0.8268
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10025613 [exp]	13.1	0.7708
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	15.0	0.8228

Compare expression of checked genes

Lus10004278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.