Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10530 523 / 3e-178 Concanavalin A-like lectin protein kinase family protein (.1) AT5G65600 485 / 5e-163 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 343 / 4e-108 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 332 / 3e-104 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 325 / 4e-101 Concanavalin A-like lectin protein kinase family protein (.1) AT5G59260 319 / 5e-99 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 315 / 2e-97 RLK receptor lectin kinase (.1) AT3G59700 314 / 2e-97 LECRK1, ATHLECRK LECTIN-RECEPTOR KINASE 1, lectin-receptor kinase (.1) AT3G45430 312 / 2e-96 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53380 311 / 1e-95 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029555 [exp] 527 / 1e-179 AT5G10530 687 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004277 [exp] 522 / 1e-177 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029554 [exp] 502 / 7e-170 AT5G10530 590 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016833 [exp] 501 / 8e-170 AT5G10530 575 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10029553 [exp] 498 / 4e-168 AT5G10530 591 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007074 [exp] 457 / 1e-154 AT5G10530 426 / 4e-143 Concanavalin A-like lectin protein kinase family protein (.1) Lus10007075 [exp] 412 / 1e-138 AT5G10530 397 / 1e-133 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020456 [exp] 421 / 6e-138 AT5G10530 519 / 1e-176 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 421 / 1e-137 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G004200 [exp] 748 / 0 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004500 [exp] 577 / 0 AT5G10530 725 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.003G094700 [exp] 564 / 0 AT5G10530 764 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004300 [exp] 559 / 0 AT5G10530 743 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G284200 [exp] 540 / 0 AT5G10530 441 / 8e-148 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 466 / 3e-155 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283208 [exp] 466 / 3e-155 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283700 [exp] 465 / 8e-155 AT5G10530 497 / 7e-168 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283204 [exp] 460 / 9e-154 AT5G10530 472 / 3e-159 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 460 / 5e-153 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0004 [flax] [poplar] Concanavalin PF00139 [flax] [poplar] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Lus10004279 pacid=23163593 polypeptide=Lus10004279 locus=Lus10004279.g ID=Lus10004279.BGIv1.0 annot-version=v1.0 ATGACTCATCATCTCCCGATCATCACCGTCGCCACAACAATCTTCATCTTCATAACGGCAATTACTCTCATGCCATCCCCTGCGACCGCCGTCTCATTCA ACTTCACAACCTTCAGCCCAAACACGATGAGCGACATCTTCTTCCAAGGCGACTCCTTCGCATCCAACGGCGCCCTCCAGCTGACCAAGAACGCCGTCGG CGAGAGCCTCCGCAGCAGCGCCGGCCGCGTCACTTCCCGTCAGCTCATCCCTCTCTGGGACTCCTCAACAGGGGAGGTTACCAATTTCACCACCCACTTC ACCTTCACGATGAAAGCTGTCAACTTGTCTGAAAACTACGGCGACGGGATGACTTTCTTCCTCTCGCCGGCCAACTCCCAGATTCCGGCGAACTCCACTG GCGGGTACCTCGCTCTGTTTAGCCGCGAAACAGCCCTAAACTCCGATAAGAGCCATCAGATCGTGGCGGTCGAATTTGACAGCAGCTGGAATTCTTGGGA TCCGAGCGACGACCACGTCGGAATTGACGTCAACTCGATCCGCTCCGTCGCGGTTCAGAATTGGTCCAGCAGTATAAAAGACGGAAGAACCGCCAACGCT TGGATAAATTACAATTCCGCCACTAAAAATTTGAGCGTCTTCCTCACTTACGCAGAAAATCCAGTATACGATGGAAACTCCTCAAGTCTTTCCTTCCCAA TCGATTTGCGCGAATTCTTACCGGAGTTCGTCACCGTCGGATTCTCCGCCTCGACCGGAATCTCCACCCAGATCCACAAAGTCATCGCCTGGGATTTCAA TTCCACCCTGGAGATCAACAAGCCGCGAAAAAAGTCCGGGTTAGCGGTCGGGTTAGGGATAGCGTTCGGGTTGTTGTTTATCGGATTCGGAGCGTTTCTG TTCTGGAGAATCAGAATCCGCGGGCGGAGAAACAACGACGACGACGGAGGATTCGAAATGGACGAGGATTTCGAGAAAGGAACAGGACCCAAACGATTCA GCTACCGTGAGCTCAGCAGAGCGACGGGGAACTTCTCCGATTCGGGGAAGCTAGGGGAAGGCGGATTCGGCGGGGTCTACAAAGGAATCTTATCCACCGC AACCGGCGGATCCGATGAAATCGCCGTCAAGAGAATTTCGAGAACTTCACGGCAAGGGAAGAAGGAGTATATATCAGAAGTTAGAATAATCAGCCGATTG AGACATCGGAATTTAGTCCAATTGATCGGATGGTGTCACGAGAAGAACGAATTGCTTCTCGTCTATGAATTCCTCCCAAATGGAAGCCTCGATCATCATC TCTTCGGCGGAGGGAATTCAAAATCGACGGTTCTCGATTGGTCCGTACGGTATAAAATTGCTTTAGGGTTAGCTTCAGGGCTGCTGTATTTGCACGAGGA ATGGGAGCAGTGTGTAGTACACAGAGACATTAAATCGAGCAATGTGATGCTGGATTCGAATTTCAATGCTAAGTTAGGTGATTTTGGGTTGGCGAGGCTG GTGGATCATGAATTAGGCTCTCAGACGACGGTTCTGGCAGGGACGATGGGGTACTTAGCGCCGGAGTGTGTAACGACGGGGAAAGCGAGTAAAGAATCCG ATGTTTATAGCTTCGGAGTTGTGTGTTTGGAAATTGCTTGCGGGAGGAAGCCGGTGGATCCGAAGCAGGAGCTGAGGAAAGTTCGGTTGGTGGAATGGGT GTGGGATTTGTACGGTCAAGGGGAGATTCTGGAAGCGGTGGATTGGAAGTTAGCCGCCGCCGCCGACGGAGGCGGATTGGATACGGAGGAGGTGGAGAGG TTGATGATTGTGGGCCTGTGGTGTTGTCATCCTGACGAGATGAATCGGCCGTCGATTAGGCAGGTGATTAGTGTGCTGAAGAATGAGGCGGCGTTGCCGA GTTTGCCGGCGAAGTTGCCGGTGCCGACGTATTACGCGCCGCCGCTGGATATCACGAAGTTTAAGTCGTATGATACGACGTCGTCTGGTAATGTGGTGGC GGGGAAAACGGGGGTTTCGCAAACGAGTTACGCTACGACGACGTCAAGGAGTTCTTCAACGAGGTCGGCGTGGTCTGAGGACGGGTTGTTGGTTTCTCAG AAGAGTTAG
AA sequence Show only first row Show all	>Lus10004279 pacid=23163593 polypeptide=Lus10004279 locus=Lus10004279.g ID=Lus10004279.BGIv1.0 annot-version=v1.0 MTHHLPIITVATTIFIFITAITLMPSPATAVSFNFTTFSPNTMSDIFFQGDSFASNGALQLTKNAVGESLRSSAGRVTSRQLIPLWDSSTGEVTNFTTHF TFTMKAVNLSENYGDGMTFFLSPANSQIPANSTGGYLALFSRETALNSDKSHQIVAVEFDSSWNSWDPSDDHVGIDVNSIRSVAVQNWSSSIKDGRTANA WINYNSATKNLSVFLTYAENPVYDGNSSSLSFPIDLREFLPEFVTVGFSASTGISTQIHKVIAWDFNSTLEINKPRKKSGLAVGLGIAFGLLFIGFGAFL FWRIRIRGRRNNDDDGGFEMDEDFEKGTGPKRFSYRELSRATGNFSDSGKLGEGGFGGVYKGILSTATGGSDEIAVKRISRTSRQGKKEYISEVRIISRL RHRNLVQLIGWCHEKNELLLVYEFLPNGSLDHHLFGGGNSKSTVLDWSVRYKIALGLASGLLYLHEEWEQCVVHRDIKSSNVMLDSNFNAKLGDFGLARL VDHELGSQTTVLAGTMGYLAPECVTTGKASKESDVYSFGVVCLEIACGRKPVDPKQELRKVRLVEWVWDLYGQGEILEAVDWKLAAAADGGGLDTEEVER LMIVGLWCCHPDEMNRPSIRQVISVLKNEAALPSLPAKLPVPTYYAPPLDITKFKSYDTTSSGNVVAGKTGVSQTSYATTTSRSSSTRSAWSEDGLLVSQ KS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10530			Concanavalin A-like lectin pro...		Lus10004279 [exp]	0	1
AT5G51160			Ankyrin repeat family protein ...		Lus10041537 [exp]	3.5	0.9435
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10013830 [exp]	4.1	0.9457
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10032035 [exp]	5.5	0.9338
AT4G13180			NAD(P)-binding Rossmann-fold s...		Lus10010673 [exp]	6.0	0.9409
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10033735 [exp]	6.9	0.9290
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014108 [exp]	7.0	0.9308
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10039348 [exp]	8.5	0.9391
AT2G47130		AtSDR3	short-chain dehydrogenase/redu...		Lus10042181 [exp]	8.9	0.9343
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10004990 [exp]	11.0	0.9188
AT5G05340			Peroxidase superfamily protein...		Lus10034207 [exp]	13.4	0.9272

Compare expression of checked genes

Lus10004279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.