Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019232 [exp] 1129 / 0 ND / Lus10040331 [exp] 45 / 0.0002 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059900 [exp] 810 / 0 ND / Potri.007G108900 [exp] 798 / 0 ND / Potri.007G108800 [exp] 798 / 0 ND / Potri.005G059801 [exp] 74 / 3e-16 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00266 [flax] [poplar] Aminotran_5 Aminotransferase class-V
Representative CDS sequence Show only first row Show all	>Lus10004280 pacid=23163599 polypeptide=Lus10004280 locus=Lus10004280.g ID=Lus10004280.BGIv1.0 annot-version=v1.0 ATGGACCTCGACCAGCTGACCACATTAGCTCATCAACCCTCGTCATCCCTCTCCAAAATGAGCTTAGCTACAGCCACTACTCCTCGCAATAACCAAAGCC AAATTATACCCACCGCCACCGGCGCCGGCGACGGATCAAGTTCATTTCCGCCCTCCTCCAACGACCTCTGCAGCAGCCGCTCCGAATCCTTCAGAAAGCT AGACGCCGGCGTCCTGAAAACCACCTCACCACAAAAGCGCCTCTCCTGGCTCCGATCGCAGATCATCGGCAACGAAGCCGAATTTGACTCCCCGTTCGGA AAACGCCGCATCACCTACGCCGACCACACTGCCTCCGGCCGATCCCTCCACTACATCGAGAATTTCATCGTCAGCGACGTCCTCCCTTACTACGGCAACA CCCACACCTGCGACAGCTACGTCGGCCGCCGGACTACAAAAATGGCGGAGGAAGCTGCGGCGTACATCAAACAACGCCTCGGCGGCGGTGAGGACGACGC CGTCTTGTTCTGCGGGTCAGGGACCACGGCGGCGATCAAGCGGCTGCAGGAAGTGATGGGAATCACCGTGCCGTCGATTCTGCGGGAAAGGTATTTGACG AAATGCCTGACCGGAGATGAAGAAAGATGGGTTGTTTTCGTGGGGCCGTATGAGCATCACTCGAACTTGCTGACGTGGCGGCAGAGCTTGGCGGAGGTTG TGGAGATTGGGCTTGATGAGGATGGGTTGTTGGATATTGAGGCTCTCCGGCGGGAGCTTGGTTCAGGTAAGTTTACGAACCGGCCGATTCTCGGTTCGTT CTCGGCTTGTAGTAATGTCACCGGGATTTGTTCGGATACTCGGGCGATCGCCGAGCTTCTTCACCGGCACGGCGGGTTTGTCTGCTTTGATTTTGCGGCA AGTGGTCCTTATACGAAGATTGATATGAGAGCAGGAGCATACGATGGATACGATGCGATATTCCTCAGCCCACACAAGTTCGTTGGTGGCCCTGGAACAC CTGGCATTCTCTTGATCAGCAAAGCTCTATATCGACTTGGTTCATCTCCTCCTTCCACTTGCGGTGGTGGAACTGTTGATTATGTCAATGGGTTCGATGA GCAGGACACGCTATACATTGAAGACATCGAATCGCGCGAAAAAGGCGGGACCCCTCCGATAATCCAAACCATTCGAGCCGCACTAGCCTTCTGGATCAAA GAATACATCAGTCATCCAGTGATCCAAACCCAAGAACATCTCTTCATCGGAAAAGCACTCAAAAGACTCACCCCAAATAAGAACATCATAATCTTGGGTA TGAAGAACAACACAGCAGTCAAGAGACAAGCCATAATGTCTTTCCTTATACTCTCCACTGAGCAACGACGACGACGAGTGTCGTCGTCGACCCTTGACAT GTGGGCCGAGACTGGGGAAGTGGTCGGTAAGCCTCTCCACGGGGCTTTCATCGCGGTTCTTCTCAACGACTTGTTCGGGATCCAGGCTCGAGGTGGGTGT GCATGCGCTGGACCTTACGGCCACCGGCTGCTTGGCGTTGATGAAGGTGCTTCTCTGGCTATTAGATCAGCCATACTCAAGGGCTACCTCGGAGTGAAAC CCGGATGGGCGAGGATCAGCTTTCCGTACTACATGTCCGGCGAGGAATTTGAGTTCATTCTGGCGGCGGTGGAGTTCTTGGCGATCTACGGCCAGAGATT TCTTCATTTGTACAGATTCGATTTCAGGAGCGGCTGTTGGACTTTGGACGGCATAGGTGAATTCCGAGAGCTGGTAAAGAAGCTTGGAGTTAGCAAATCT AGTGCTGGTAGTAGCGGTGGTGGAAATCGTTATGGAGTCGAACGTGGTGGACTCGTTAGCGAGTTCAGTTCGTACCTTGAAGTCGCGAAGAACATCGCCA ATTTGCTTCCCAAGTTCCCGTCTGAGCGGGAGGTTCCTCAGGATTTGGATCCTGACGTTTTGCACTTCCGAGTGTAA
AA sequence Show only first row Show all	>Lus10004280 pacid=23163599 polypeptide=Lus10004280 locus=Lus10004280.g ID=Lus10004280.BGIv1.0 annot-version=v1.0 MDLDQLTTLAHQPSSSLSKMSLATATTPRNNQSQIIPTATGAGDGSSSFPPSSNDLCSSRSESFRKLDAGVLKTTSPQKRLSWLRSQIIGNEAEFDSPFG KRRITYADHTASGRSLHYIENFIVSDVLPYYGNTHTCDSYVGRRTTKMAEEAAAYIKQRLGGGEDDAVLFCGSGTTAAIKRLQEVMGITVPSILRERYLT KCLTGDEERWVVFVGPYEHHSNLLTWRQSLAEVVEIGLDEDGLLDIEALRRELGSGKFTNRPILGSFSACSNVTGICSDTRAIAELLHRHGGFVCFDFAA SGPYTKIDMRAGAYDGYDAIFLSPHKFVGGPGTPGILLISKALYRLGSSPPSTCGGGTVDYVNGFDEQDTLYIEDIESREKGGTPPIIQTIRAALAFWIK EYISHPVIQTQEHLFIGKALKRLTPNKNIIILGMKNNTAVKRQAIMSFLILSTEQRRRRVSSSTLDMWAETGEVVGKPLHGAFIAVLLNDLFGIQARGGC ACAGPYGHRLLGVDEGASLAIRSAILKGYLGVKPGWARISFPYYMSGEEFEFILAAVEFLAIYGQRFLHLYRFDFRSGCWTLDGIGEFRELVKKLGVSKS SAGSSGGGNRYGVERGGLVSEFSSYLEVAKNIANLLPKFPSEREVPQDLDPDVLHFRV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004280 [exp]	0	1
AT4G14480			Protein kinase superfamily pro...		Lus10041162 [exp]	1.0	0.9946
					Lus10019232 [exp]	1.4	0.9934
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	1.7	0.9929
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	3.2	0.9833
AT2G43590			Chitinase family protein (.1)		Lus10003587 [exp]	3.5	0.9853
AT1G14550			Peroxidase superfamily protein...		Lus10024207 [exp]	4.1	0.9666
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10014673 [exp]	7.0	0.9780
AT5G54960		PDC2	pyruvate decarboxylase-2 (.1)		Lus10027820 [exp]	9.2	0.9677
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Lus10034042 [exp]	9.9	0.9707
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	10.4	0.9788

Compare expression of checked genes

Lus10004280 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.