Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22620 799 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G37950 745 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 694 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G38030 691 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 684 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 640 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 635 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 221 / 2e-67 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019231 [exp] 1228 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 939 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 883 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 686 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10028212 [exp] 685 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 612 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 611 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 610 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10023106 [exp] 596 / 0 AT2G22620 611 / 0.0 Rhamnogalacturonate lyase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218500 [exp] 880 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 829 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.005G151500 [exp] 716 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 711 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 682 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 663 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 662 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 565 / 0 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10004281 pacid=23163608 polypeptide=Lus10004281 locus=Lus10004281.g ID=Lus10004281.BGIv1.0 annot-version=v1.0 ATGGCTCAACACGCAGAACCAATTTCTCACCAGATGGAAAGTCGAGTAACCAACAGTAGTTCAGGTTTAGCTGTGCAGCTCGATCGGGAAAAAGATCCAC AAAGGGTGAAGCTAAGCTTTCCATTTCCTTTCATCTTACAGGAAAAACCTGAGTTTTCAACTAATCGATTCTTCATCTATGAACAGGTGATAATCGACAA TGGAATTGTCCGAGTTACTTTCGCCACCCCGGAGGGACACATCATCGGGATCAAATACAAGGGAATCGGCAACGTTCTTGAATCCGATAATGAATACAAC AATCGAGGCTACTGGGACGTCGTCTGGAACAAGCCTGGTGCAGAGAATGACTTCGACAAATTGGCAACATCGCATTTCAGACTGGTGATGCAAGATGAGG ATCAGATAGAAGTCTCCTTCAGCAAGACATGGAAGCCGGAAGATTACTCGGACACAGTTCCGCTGAACGTCGACAAGAGGTACATATTGCGGAACGGGAG CTCTGGGATTTACATGTACACGATCCTCGAGCGGCTGGATGGGTGGCCTGATGTTGATATGGATCAGATCAGGGTTGTTTTCAAGCTCCAGGACAAATTG TTTCGTTACATGGCGATATCTGATGAGAGGCAGAGAGTGATGCCGACGGTAAAGGATCGGGAGAGTGGTCAGGCTTTAGACTACCCGGAGGCTGTTCTCT TGACTCGTCCTTCCAATCCTGCTCTTAGAGGCGAGGTGGATGATAAGTACCAGTATTCGTGTGAGGATCAGGACAACAAGGTTCATGGATGGATATCGGA GGATCGTCGAGTGGGGTTCTGGATGATCACTCCTAGTGACGAATTTCGAGTTGGGGGGCCGGTCAAGCAGGATCTTACCTCCCATGTCGGCCCAACTGTG CTCAATATGTTCACTAGTACTCATTATGCTGGAAAGGACATGAATACTGAATATAGAAATGGTGAGCCCTGGAAGAAAGTTGTTGGCCCTGTTTTTGTTT ACCTGAATGCAGGAAGAACTTCAAAACTATGGCGAGATGCTAAGAGACGGATGCACAGGGAAGTAAAGAGCTGGCCATATGACTTTGTTAAGTCGGAAGA TTTCCCTTCAGCGGATCAACGAGGAACTGTAGTTGGCCAACTATTACATCGTGACAGATATACCAATGAGAATAGGTTGACGTATGCTGGGTCAGCATAT GTTGGGTTGGCAATGCCAGGAGAAGAGGGATCATGGGAAACTGATGCCAAGGGGTATCAATTCTGGACTCGAGCTGATGAGCAAGGCAAGTTCTCGATTG ACAACATCAGAGCTGGAACTTACAGCTTCTACAGTTGGGTTCCTGGAATCATTGGTGAAAACAAGTACAAACCTAACATCACAATTCGTCCCGGATCGAA GATCGACTTAGGCATGCTTGTGTATAATCCACCAAGGAACGGACCAACTCTATGGGAAATTGGGATTCCTGACAGGAAAGCTGCCGAGTTCTATGTTCCT GATGCTTACCCTACTCTAATGAATAAGCTCTACGCTAATCGCCCAACTGAAAGATTCAGACAATATGGATTGTGGTCACGATATGCCGACAAGTACCCGA AGCACGATCTAGTCTACGAAGTTGGAGTCAGTAACTTCTTCGAGGATTGGTTCTATGCTCATGTCCCACGACGCGCAGGGAACAACACTTACAGGGCAAC CACATGGCAGATTAAGTTTGATCTTCCGAAACCTGACAGAAGCGGAGACTATACACTTCAGCTGGCTTTAGCTTCAGCAGCGAACGCAGAGATTCAGGTG CGGTTCAATGATTGGAATACTTCGGGGAAGCCTCTGTTCACGACGGGGCTAATAGGGAAAGATAACGCCATAGCGAGACACGGCATCCATGGCTTGTATT GGCTGTTCAGTATCTCTGTGCCGTGCGGCCGGATTGTGGATGGGAAGAACTCCGTTTACTTGACTCAGACGAGAACTGACCGTCCATTTAACGGCGTTAT GTATGATTACATTCGTTTGGAAGGGCCTAAGTGGAAGTTTTGA
AA sequence Show only first row Show all	>Lus10004281 pacid=23163608 polypeptide=Lus10004281 locus=Lus10004281.g ID=Lus10004281.BGIv1.0 annot-version=v1.0 MAQHAEPISHQMESRVTNSSSGLAVQLDREKDPQRVKLSFPFPFILQEKPEFSTNRFFIYEQVIIDNGIVRVTFATPEGHIIGIKYKGIGNVLESDNEYN NRGYWDVVWNKPGAENDFDKLATSHFRLVMQDEDQIEVSFSKTWKPEDYSDTVPLNVDKRYILRNGSSGIYMYTILERLDGWPDVDMDQIRVVFKLQDKL FRYMAISDERQRVMPTVKDRESGQALDYPEAVLLTRPSNPALRGEVDDKYQYSCEDQDNKVHGWISEDRRVGFWMITPSDEFRVGGPVKQDLTSHVGPTV LNMFTSTHYAGKDMNTEYRNGEPWKKVVGPVFVYLNAGRTSKLWRDAKRRMHREVKSWPYDFVKSEDFPSADQRGTVVGQLLHRDRYTNENRLTYAGSAY VGLAMPGEEGSWETDAKGYQFWTRADEQGKFSIDNIRAGTYSFYSWVPGIIGENKYKPNITIRPGSKIDLGMLVYNPPRNGPTLWEIGIPDRKAAEFYVP DAYPTLMNKLYANRPTERFRQYGLWSRYADKYPKHDLVYEVGVSNFFEDWFYAHVPRRAGNNTYRATTWQIKFDLPKPDRSGDYTLQLALASAANAEIQV RFNDWNTSGKPLFTTGLIGKDNAIARHGIHGLYWLFSISVPCGRIVDGKNSVYLTQTRTDRPFNGVMYDYIRLEGPKWKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10004281 [exp]	0	1
AT5G66310			ATP binding microtubule motor ...		Lus10014268 [exp]	1.0	0.9779
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10040676 [exp]	2.0	0.9773
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	3.0	0.9520
AT2G37370			unknown protein		Lus10009063 [exp]	4.0	0.9585
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	4.0	0.9688
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10008974 [exp]	4.2	0.9743
AT1G02400		ATGA2OX4, ATGA2...	DOWNSTREAM TARGET OF AGL15 1, ...		Lus10025016 [exp]	5.7	0.9393
AT5G40900			Nucleotide-diphospho-sugar tra...		Lus10032050 [exp]	5.8	0.9265
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	5.9	0.9630
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	6.0	0.9628

Compare expression of checked genes

Lus10004281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.