Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08630 427 / 8e-140 DDT domain-containing protein (.1) AT5G44180 52 / 1e-06 HD Homeodomain-like transcriptional regulator (.1.2) AT1G28420 50 / 5e-06 HD HB-1 homeobox-1 (.1) AT4G12750 48 / 2e-05 Homeodomain-like transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039626 [exp] 766 / 0 AT5G08630 633 / 0.0 DDT domain-containing protein (.1) Lus10029550 [exp] 623 / 0 AT5G08630 415 / 2e-136 DDT domain-containing protein (.1) Lus10015325 [exp] 59 / 1e-08 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 59 / 2e-08 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10039870 [exp] 54 / 6e-07 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 54 / 7e-07 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10012302 [exp] 53 / 1e-06 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 47 / 5e-05 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G008541 [exp] 671 / 0 AT5G08630 683 / 0.0 DDT domain-containing protein (.1) Potri.004G138900 [exp] 644 / 0 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.007G135500 [exp] 58 / 3e-08 AT5G44180 1226 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.017G016200 [exp] 55 / 2e-07 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.004G048675 [exp] 54 / 5e-07 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.011G057700 [exp] 53 / 1e-06 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.014G173300 [exp] 50 / 5e-06 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10537 [flax] [poplar] WAC_Acf1_DNA_bd ATP-utilising chromatin assembly and remodelling N-terminal PF02791 [flax] [poplar] DDT DDT domain
Representative CDS sequence Show only first row Show all	>Lus10004282 pacid=23163616 polypeptide=Lus10004282 locus=Lus10004282.g ID=Lus10004282.BGIv1.0 annot-version=v1.0 ATGCCTTTGCTGGGAAAGACAGCATTTCCTTTGCTGGAGCCACCTGAAGATTTAAAGCCTAAAAATCGTGTGTTCCAAGTTCGCTTCACCAAGGAAATCT TCCGTGACTATCGAGAGTATGTGAAACGGATGAATTTCTATCGCCAAAGAATTTGGACTTGCAAGATTAGTGGCAAAGCAAACTTGACATATGAAGAGGC CCTAGTTTCCGAGAAACTTGGTGTGGAGAAGGTTCAAGAGATGCCTCAAGAGCTTGTGGAGCCTGCTCTGTGTGTCATACAATTTAGTATGCTTTCACTG AAACGTCTTGCAAAAAGAATCAGTGAAAAATTGAAGGAATACAAGTTTGTCGGGGATGAATTGCATGCTAGAAAGGGTGAAAGTTTGTTGCCTTGCAAGA TATTAAAGCTTCTGGAAGATAGTGATGGCAAAACTTGCTATGAGATAAAATGGCTTGAGAATAGTAATAAGGTGACAGGGACTTCGGTTGTTAACGGGAA TGACCTGATACGGAAGAAGAAGCCATGGAGCAGAGACATTCTGATGTCTTTTATTAGGGAATCCACATACCGTAGAGATCCCTGGGTTCTTCATGACCAG TTAGCTGAAAAACACGGCATCTCAAATAATCTACCAGAAGAGCTTAATGGCAAAGTTTTTATCTCTGATGGAGTAATCTGCGATAAGAAGAGGAAAAATG TTGGGGATGGAGAAGAAATGGGGAATTCCAAGAAGATAAAAGCGGGTGGTGAAATTGAAGTAACAGATGTAGCAAAGAACAGTGAAACAGAAGCAAAGCA AGTTGAAATTATCAAGTATCCAATCGATGACCTCTTAGTTCAACCAGCAGCAAACGATCCGGTCTTCACTGAACGCCCTTTACCTTTGAGGGACTTCAAT GTCCCTGCGGACTGCGTTGGAGATCTTCTACTGGTTTGGGACTATTGCTCTTCGTTTGGCAGGCTGTTAAATTTGTGGCCATTCCCAATAGAAGACTTTG AAAAAGCTATCTGCAGCAAGGACAGTAAACTCATACTTATTGTTGAGATACATTCTGCTCTTCTATGTTTACTTCTTAAAGGAAATGGAGATCGTTTTTT CTCTGCACCGGGGAGGACTAAAAAATCAAAGATAACATTGGTCAATTGGACTGAAGACCTTTGCGATTTCATTGAAAAGATAGACCATCCTGGTCTATCG GCCTCGACATCAACTATTAAACGAGGACACTATGGACTCCTAGATATTCAAGTGAAACTTGGAATATTACATGAGTTGGTAAATGAAGCCGTTGAATCAG CTCTTTTCAGAAAGAAGATGGATGAGTGTGTTGACCAAAGGCAACTGCTTGGCTCCGCATATAGAGCAGAGGCCTTGGAAGAAGCAAGAAAAAAACGAGA GGAGAAAGAACGGTCAAAGATTGCGGATGTTGTCAACGTAGTAGACAATGGGAATTGCGTAGTTGACTCGGAGGGTTTTCAACGCAATCGAGTTGCAACG GTTAATTGGAACAGCGATCGAAATGGAGTGTTTCTAAGAAGACATAACTCAGGGGGGTTCTCTTCTAAAGAGAACCATACGTCAGATAAAAGTGACAATG ACCATTCGGAGACTCTATCAAAGACAATTGGGGACAATGCAGCAAAACAATTGCCGGATGAAAAGAAAGGAGGGACGGAAAGGAGGAGCGCATATGAAAG GAGGGAGCAATATAATCGGGAGTTGGAGAAACTGGCAGTACGCACTGAAGCCTTGGGTAAAGACAGGCACTATCAGAGATATTGGTGGTTCCAACGCGAT GGAAGGATATTCGTGGAGAGCTCCGACTGCAAAGAGTGGGGCTTTTATAGCAGCAAAGAAGAGCTCAATGCATTGATGGGTTCTCTGAACCGTAAGGGCG AGAGAGAAATGGCTCTTCACACTCAGCTTGAGAAATGGCACAGCAGGATTTGTGCGCAAATGGAAAAGAGATCGAAAGATTTGGCTCGTGAAACCCTGTT GAACGAGGCAGTGCTGAGGAGATCTACTCGTGTACAGGCTACGCCGCGAGAACCTCCACCAGCCTCGTACCTTAGGTATGTGAATAAGTGGAAGGAAGAG TAA
AA sequence Show only first row Show all	>Lus10004282 pacid=23163616 polypeptide=Lus10004282 locus=Lus10004282.g ID=Lus10004282.BGIv1.0 annot-version=v1.0 MPLLGKTAFPLLEPPEDLKPKNRVFQVRFTKEIFRDYREYVKRMNFYRQRIWTCKISGKANLTYEEALVSEKLGVEKVQEMPQELVEPALCVIQFSMLSL KRLAKRISEKLKEYKFVGDELHARKGESLLPCKILKLLEDSDGKTCYEIKWLENSNKVTGTSVVNGNDLIRKKKPWSRDILMSFIRESTYRRDPWVLHDQ LAEKHGISNNLPEELNGKVFISDGVICDKKRKNVGDGEEMGNSKKIKAGGEIEVTDVAKNSETEAKQVEIIKYPIDDLLVQPAANDPVFTERPLPLRDFN VPADCVGDLLLVWDYCSSFGRLLNLWPFPIEDFEKAICSKDSKLILIVEIHSALLCLLLKGNGDRFFSAPGRTKKSKITLVNWTEDLCDFIEKIDHPGLS ASTSTIKRGHYGLLDIQVKLGILHELVNEAVESALFRKKMDECVDQRQLLGSAYRAEALEEARKKREEKERSKIADVVNVVDNGNCVVDSEGFQRNRVAT VNWNSDRNGVFLRRHNSGGFSSKENHTSDKSDNDHSETLSKTIGDNAAKQLPDEKKGGTERRSAYERREQYNRELEKLAVRTEALGKDRHYQRYWWFQRD GRIFVESSDCKEWGFYSSKEELNALMGSLNRKGEREMALHTQLEKWHSRICAQMEKRSKDLARETLLNEAVLRRSTRVQATPREPPPASYLRYVNKWKEE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	0	1
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10037938 [exp]	2.8	0.9179
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10033533 [exp]	2.8	0.9235
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	3.2	0.8951
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Lus10017682 [exp]	4.2	0.9157
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	5.0	0.9060
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10023127 [exp]	6.8	0.8814
AT5G52950			unknown protein		Lus10027565 [exp]	7.2	0.8804
AT4G08310			unknown protein		Lus10003736 [exp]	7.7	0.8927
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10011329 [exp]	7.9	0.8761
AT1G18030			Protein phosphatase 2C family ...		Lus10009642 [exp]	8.7	0.9078

Compare expression of checked genes

Lus10004282 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.