Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19130 285 / 1e-83 S-locus lectin protein kinase family protein (.1) AT4G00340 272 / 2e-79 RLK4 receptor-like protein kinase 4 (.1) AT1G34300 266 / 6e-77 lectin protein kinase family protein (.1) AT5G35370 244 / 1e-68 S-locus lectin protein kinase family protein (.1) AT1G11280 221 / 5e-61 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61480 219 / 3e-60 S-locus lectin protein kinase family protein (.1) AT4G21390 219 / 5e-60 B120 S-locus lectin protein kinase family protein (.1) AT1G11300 220 / 2e-59 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT5G60900 215 / 3e-59 RLK1 receptor-like protein kinase 1 (.1) AT1G61360 213 / 3e-58 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024348 [exp] 560 / 0 AT2G19130 378 / 4e-118 S-locus lectin protein kinase family protein (.1) Lus10024343 [exp] 548 / 0 AT2G19130 379 / 6e-117 S-locus lectin protein kinase family protein (.1) Lus10032944 [exp] 544 / 0 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10013252 [exp] 312 / 5e-94 AT1G34300 378 / 7e-119 lectin protein kinase family protein (.1) Lus10031230 [exp] 309 / 1e-92 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 300 / 3e-89 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10029802 [exp] 286 / 1e-84 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10031805 [exp] 286 / 2e-84 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 283 / 6e-83 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G096400 [exp] 811 / 0 AT2G19130 347 / 2e-107 S-locus lectin protein kinase family protein (.1) Potri.013G095800 [exp] 799 / 0 AT2G19130 350 / 2e-108 S-locus lectin protein kinase family protein (.1) Potri.013G086100 [exp] 753 / 0 AT4G00340 300 / 1e-89 receptor-like protein kinase 4 (.1) Potri.013G096000 [exp] 698 / 0 AT2G19130 300 / 1e-90 S-locus lectin protein kinase family protein (.1) Potri.016G102700 [exp] 576 / 0 AT1G34300 356 / 5e-110 lectin protein kinase family protein (.1) Potri.016G102500 [exp] 575 / 0 AT1G34300 360 / 1e-111 lectin protein kinase family protein (.1) Potri.016G102600 [exp] 572 / 0 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G102900 [exp] 572 / 0 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.006G091400 [exp] 567 / 0 AT1G34300 372 / 3e-116 lectin protein kinase family protein (.1) Potri.010G103300 [exp] 349 / 4e-108 AT1G34300 375 / 1e-117 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10004283 pacid=23163624 polypeptide=Lus10004283 locus=Lus10004283.g ID=Lus10004283.BGIv1.0 annot-version=v1.0 ATGGCGAGTCACAGCAATCTCACAAATCTGTCATCTTTGCTTGTACTTCTACTGCTTCTTATTATTCTGTCGCTCTCTCCGTTTGCAAACTCAACAAAGG AGACGAAGAAGCTCTTCTCCTTATCACCAAACTCCGACCACCGTCTATTTTCCCCCGGCCGTACCTTCTCCGCCGGATTCTTCCCCGTCGGCGACAACGC TTTCACCTTCTCCGTCTGGTACCACGACGGAGACAACGATGATGACTCGGCCGTCGTGGTCTGGTCAGCCAACCGAGACTACCCAATCAACGGGAAATAC TCCGAGCTGGCCCTGCTATCGTCCGGCAATCTCATGTTGGCCGACGCTGGCGGGACGGTCGTATGGGAGACCAAAACGGCAACGTCGTTGTTTTCGTCTC CGAGTTTGCTTCTCCTCGACAGTGGGAACTTGGTGGTCAAGAATTCAAATGGGACGATTCTATGGCAGAGCTTTGACTTTCCAACGGACACTCTGCTTCC CAACCAGCCGTTGACTAAGGAAAACCGGTTGGTCAGCTCGAGGAGCCGAACCAACTGGTCTTCGGGCTACTTCTCGCTCTACTTCGACAACGACAACGTC CTCCGTCTCCTCTACGCCGACTCCTACGTGTCGAGCGTCTATTGGCCCGATCCGGAGCTTATGAGCTGGGAAGCCAAACGGTCAACCTACAACAGCTCCC GAATCGCGGTACTCGATTCCTCGGGTAATTTTTCGTCCACGGATGGATACACCTTCATGTCATCCGACTACGGTTTGGTCACGATCCAACGTCGAATTAA GCTTGATTTCGATGGGAATGTTCGACTGTACAGCCGAGAACGAGAGTTCGGACCATGGGAGATCGCGTACGAGGCCATGTCGCAATCGTGCAGGATCCAC GGGAGCTGCGGGCCGAACAGCTTGTGCAATTACGTTCCAGGACAGGGCAGGAAATGCTCCTGCATTCCAGGATTCAGAGCTGTTGACCAAACGGACTGGT CAAAAGGTTGTATGAGAGAATTCAACCTCCCTTGCAACAACAAAACCAGCGAGGTAGAGTTTATCAAGCTGGCCAATGTCGAATTCTACGGCTACGATTT CGTATTCCAACCGAATTACACGTTGGATCAATGCAAGAACGTGTGCCTGGAAAGATGTGATTGCTTGGGATTCCAGTTCAAGTTCATCAAGCATAATTAC CCTAGCAACATGCCGTACTGCTTCGCCAAGACACAGCTGCTCAACGGCCGACATTCCTCCAATTTCGAAGGCGATCTGTATTTAAAGGTTGCGAAGGGGA TAGTAAACTCGTCGTACGAGCCGCTAGATAGCTTCAAACTGAAGTGCCCTGCAGGAGTGGTGAATCAGCAGATAGAGAGGAAGTATACGAAGGGCAAGGA GAACGATTCGTTGAGGTTCGTTCTCTGGTTTGCAGTAGCGATGGGAGGGATCGAGTTCGTCGGCATCGGGCTAGTTTCATACTACTTGATTTCGCGATCG CGAGGAAGCTACGAGAAAGTTCTAGACTCTGGAGAAGTAGGATTAAACGCATTCGGGTTTCGAAAATTCACGTACGCGGAGCTGAAGAAGGCGACGAGAG GGTTTCAGGACGAGATAGGGAGAGGAGGAGGAGGGGCGGTGTACAGAGGCACGCTCTCCGATCTGAGAGTGGCAGCAATCAAGAAGCTGACGACGGAGGA TGATCGGAGTGGCGAGGAGGAGTTTCGAGCGGAGGTGAGCACGGTGGGGAAGCTGCACCATAAGAACCTAACAGAAATGTGGGGGTACTGTTCAGAAGGA AAGCACAGGATGCTGGTGTACGAGTACATGGAGAGGGGTTCGCTAGCCGAGAATTTGATGTCGGGAACGCTCGATTGGGGGACGAGGTATCGGATCGCGG TGGGGGCCGCAAGAGGATTGGCGTACTTACACGAGGAGTGCCTCGAGTGGGTGCTGCATTGCGACGTCAAGCCCGGGAATGTATTATTGGACAAGGAGTA CAATGCGAAGGTGTCGGATTTCGGGCTTTCGAGGGAAGTGAAGAGATCGGAAGGGGAGGTGGGGAAGGAGGAGAGGAGGGTAAGGGGGACGAGAGGGTAC ATGGCGCCGGAGTGGGTGTTGAATGAGACGATAACGGCGAAGGTCGATGTGTATGGGTATGGGATGGTGGTGTTAGAGATGGTTACGGGGAGGAGTCCGG TCGGGTTGGTGGAATGGGTGAGGGGGGAGGTCAAGGGTGAGGAGGAGGAGGGATGGTTGGGGAAGGTGGTGGATGGGAGGCTTGGAGGGAAGTATGAGAA GGCAGAGGCCGAGGTGGCGGTGAAGGTGGCGATCCGGTGTGTCGAGGAGGATAAAGATAGCAGACCGACGATGCGTCAGGTGGTCGAGTTGCTAACTACA CACAAAGTGACTAGCCATGAAAACACTGTTAGTACCGAGTAG
AA sequence Show only first row Show all	>Lus10004283 pacid=23163624 polypeptide=Lus10004283 locus=Lus10004283.g ID=Lus10004283.BGIv1.0 annot-version=v1.0 MASHSNLTNLSSLLVLLLLLIILSLSPFANSTKETKKLFSLSPNSDHRLFSPGRTFSAGFFPVGDNAFTFSVWYHDGDNDDDSAVVVWSANRDYPINGKY SELALLSSGNLMLADAGGTVVWETKTATSLFSSPSLLLLDSGNLVVKNSNGTILWQSFDFPTDTLLPNQPLTKENRLVSSRSRTNWSSGYFSLYFDNDNV LRLLYADSYVSSVYWPDPELMSWEAKRSTYNSSRIAVLDSSGNFSSTDGYTFMSSDYGLVTIQRRIKLDFDGNVRLYSREREFGPWEIAYEAMSQSCRIH GSCGPNSLCNYVPGQGRKCSCIPGFRAVDQTDWSKGCMREFNLPCNNKTSEVEFIKLANVEFYGYDFVFQPNYTLDQCKNVCLERCDCLGFQFKFIKHNY PSNMPYCFAKTQLLNGRHSSNFEGDLYLKVAKGIVNSSYEPLDSFKLKCPAGVVNQQIERKYTKGKENDSLRFVLWFAVAMGGIEFVGIGLVSYYLISRS RGSYEKVLDSGEVGLNAFGFRKFTYAELKKATRGFQDEIGRGGGGAVYRGTLSDLRVAAIKKLTTEDDRSGEEEFRAEVSTVGKLHHKNLTEMWGYCSEG KHRMLVYEYMERGSLAENLMSGTLDWGTRYRIAVGAARGLAYLHEECLEWVLHCDVKPGNVLLDKEYNAKVSDFGLSREVKRSEGEVGKEERRVRGTRGY MAPEWVLNETITAKVDVYGYGMVVLEMVTGRSPVGLVEWVRGEVKGEEEEGWLGKVVDGRLGGKYEKAEAEVAVKVAIRCVEEDKDSRPTMRQVVELLTT HKVTSHENTVSTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19130			S-locus lectin protein kinase ...		Lus10004283 [exp]	0	1
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Lus10021769 [exp]	1.7	0.8232
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025784 [exp]	2.0	0.7850
AT3G26470			Powdery mildew resistance prot...		Lus10021768 [exp]	2.8	0.7597
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Lus10003389 [exp]	3.9	0.7621
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10040508 [exp]	13.6	0.7412
AT5G18130			unknown protein		Lus10005702 [exp]	14.0	0.7576
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	15.1	0.7291
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Lus10029534 [exp]	17.9	0.7182
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10004091 [exp]	18.7	0.6760
AT1G08315			ARM repeat superfamily protein...		Lus10024145 [exp]	19.1	0.7566

Compare expression of checked genes

Lus10004283 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.