Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25350 125 / 4e-32 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 115 / 1e-28 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 110 / 9e-27 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 95 / 2e-21 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 93 / 8e-21 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 84 / 6e-18 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 82 / 6e-17 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 81 / 8e-17 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 76 / 3e-15 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 64 / 3e-11 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019230 [exp] 197 / 2e-58 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 110 / 9e-27 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 89 / 2e-19 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 88 / 5e-19 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 82 / 3e-17 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 80 / 2e-16 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 80 / 2e-16 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036782 [exp] 71 / 1e-13 AT1G14040 322 / 4e-103 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10011799 [exp] 62 / 1e-10 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090300 [exp] 138 / 2e-36 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 115 / 2e-28 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 113 / 9e-28 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 109 / 2e-26 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 89 / 2e-19 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 87 / 7e-19 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 74 / 1e-14 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165400 [exp] 63 / 2e-11 AT1G69480 115 / 2e-29 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G169400 [exp] 64 / 4e-11 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.010G069000 [exp] 64 / 5e-11 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Lus10004284 pacid=23163618 polypeptide=Lus10004284 locus=Lus10004284.g ID=Lus10004284.BGIv1.0 annot-version=v1.0 ATGAAGTTCGGGAAGGAGCTGAAGAAACAAATGGTGCCAGAGTGGACCGAGGCCTACGTTGACTACCACGGCCTCAGGTCAATCCTACGACAGCTCCCCA ACTATCACAAACCCAAGCAGAGGAATCATCCTGATGTCGAAGGAGGCGGTGATTCGGGGGAAGAGGTTCAGAGGAAGTTGTTCAGCAAGCTTGACGAAGA GCTGAACAAGGTGGACGGGTTTTACAAGAGCAAGGTTGGGGAGATGGTTGATGAAGCATCCCAGCTGAATCTCCAGATGGAAGCTTTTCTTGCCCTGAGG CGGCAGAGTACTGATGATGTCACTGGCGGCGAGGATTCAAGCTGCCCTGTTGGTGATGATGTCAATGGCGGTGGTTCAGATGCTGTGAGTCATCATCATT CCATTGTTCCTGATGCTGTTGCAGGTGGGCATCATCATATGGACTCATCATTTCCATTGAGGAAGAACAGCTTCAACGAACCAGAGAATTCTTCTTCCAC CACCACCAGCAGTACTGGCTCCGAAGTTCATGCCACAACCATTACTACTACTACTGATCACGACCATCAACACATGCAGCAGCAAGAAGAAGAAGATCGT GTCGAGATCCTTGAACGAGTGAAGATCGAAAAGGCAAGCGATCGAATTGCCCCACTGACCGCCATTAAAGGCGTGTTCAAGGGCTCGAGAGAAGTCGAGC TGAGCCAAGTGAAATGCCAGCTCAGAGCCGCCTTCATTGAGTTCTACCACAAGCTCCGTCTTCTCGGCCATTACAATTACATGAACCTCGCTGCATTCTC CAGGATCTTGAACAAGTATGAGAAGGTCGCTTCGAGGAGGGTGGCCTCGTCGTACATGAAAGTCGTAGAGAAGTCGTCTCTTGGCAGCTCAGACGAGGTT GTTAAATGGTGTTAA
AA sequence Show only first row Show all	>Lus10004284 pacid=23163618 polypeptide=Lus10004284 locus=Lus10004284.g ID=Lus10004284.BGIv1.0 annot-version=v1.0 MKFGKELKKQMVPEWTEAYVDYHGLRSILRQLPNYHKPKQRNHPDVEGGGDSGEEVQRKLFSKLDEELNKVDGFYKSKVGEMVDEASQLNLQMEAFLALR RQSTDDVTGGEDSSCPVGDDVNGGGSDAVSHHHSIVPDAVAGGHHHMDSSFPLRKNSFNEPENSSSTTTSSTGSEVHATTITTTTDHDHQHMQQQEEEDR VEILERVKIEKASDRIAPLTAIKGVFKGSREVELSQVKCQLRAAFIEFYHKLRLLGHYNYMNLAAFSRILNKYEKVASRRVASSYMKVVEKSSLGSSDEV VKWC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	0	1
					Lus10013881 [exp]	2.2	0.9599
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	2.4	0.9651
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10002612 [exp]	2.6	0.9407
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	3.5	0.9651
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10040382 [exp]	4.2	0.7723
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	4.2	0.9651
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041128 [exp]	4.5	0.9268
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Lus10020334 [exp]	4.7	0.7503
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	4.9	0.9651
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Lus10013919 [exp]	6.0	0.9513

Compare expression of checked genes

Lus10004284 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.