Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69480 435 / 1e-147 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 385 / 3e-128 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 378 / 1e-125 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 379 / 2e-125 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 365 / 1e-120 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 351 / 1e-114 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 328 / 9e-106 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 325 / 2e-104 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03250 318 / 1e-102 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G23430 224 / 8e-67 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019230 [exp] 613 / 0 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 352 / 3e-115 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 348 / 3e-113 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 342 / 3e-111 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036781 [exp] 313 / 5e-105 AT1G14040 561 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 320 / 9e-103 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10026623 [exp] 301 / 1e-95 AT1G14040 1058 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10000203 [exp] 290 / 3e-95 AT1G14040 610 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 295 / 2e-93 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G090300 [exp] 378 / 1e-125 AT1G69480 831 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 375 / 5e-124 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 361 / 1e-118 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 352 / 2e-115 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 347 / 4e-113 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 347 / 4e-113 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 346 / 8e-113 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G069000 [exp] 230 / 4e-69 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 224 / 5e-67 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 223 / 2e-66 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10004285 pacid=23163617 polypeptide=Lus10004285 locus=Lus10004285.g ID=Lus10004285.BGIv1.0 annot-version=v1.0 ATGCTGGTGTACGCAGCCGATTTGTACTTCTGGAGGCGATACCGTGTGAACTATCCGTTCATTTTCGGGTGCCAGCGAGGGACCGAACTAGACCATCGAC AAGTGTTCTTCCTCAGCAGTGGCCTTGCATTCCTCGTACTAGCTAGCTTGCTGTGTAACTTGTACTTGTACTTGAGTTCCAATGCTACCAAATATAAGCA ACTCACTGAGCTCATGCCTCTGGGTTTGATCTTTTTGGTGGTTGCAATACTCCTCTGCCCGTTCCACGTGCTGTATCGTTCGAGTCGATTCTTCTTCGTT AGATGCTTGTTTCGCACCCTTTGTGCTCCCTTGTTCAAGGAAAGGCTTTCAGACTTCTACTTAGCCGACAACCTAACGAGCCAGTTCCAAGCGTTCCGGT GCCTCGAGCTCTACATATGCTACTACGGGCTAGGCGAGTCCTCGCGAAGGCAGGACAAATGCCACAGCCACGGAATCTACAACGCCCTCTACTTTATCGT CGCCATTGTGCCATTCTGGATCCGCTTCGCCCAGTGCATCCGACGTTACCTCGAGGAACGAGAGGCCACCCACGCGTTCAACACTCTAAAGTACCTCTCG ACAATCATAGCAGTCGTGCTCCGGACCACCTTCGAGCTCAAACGTGGCACTGCCCGGATGGCGCTGGCACTCGCTAGCTCAGCTGCCGCGGCAGCGTTCA ACGCTTACTGGGATGTGGCGGTCGACTGGGGACTACTGAGGCGGAATTCGAAGAACCGGTTTCTTCGAGACAGGATCTTGGTCCCTCGAAAGAGCGTCTA CTTCGTGGCGATGGGCGTTGATGTGGTTCTGAGGCTTGCTTGGATGCAATTGGTGCTCGAACTGAACCTGAGGAGTGTTCATAAGATGGCGGCTTTGAGT GTTATGTCTTGTTTGGAGATTGTGCGTAGGGGTTTGTGGAACTTCTTTAGGCTTGAGAATGAGCATCTCAACAATGTTGGGAAGTACAGGGCTTTTAACT CTGTTCCTCTGCCTTTTAGTTATTGTGATCCTGATGATGATGACAAGGATGACTAG
AA sequence Show only first row Show all	>Lus10004285 pacid=23163617 polypeptide=Lus10004285 locus=Lus10004285.g ID=Lus10004285.BGIv1.0 annot-version=v1.0 MLVYAADLYFWRRYRVNYPFIFGCQRGTELDHRQVFFLSSGLAFLVLASLLCNLYLYLSSNATKYKQLTELMPLGLIFLVVAILLCPFHVLYRSSRFFFV RCLFRTLCAPLFKERLSDFYLADNLTSQFQAFRCLELYICYYGLGESSRRQDKCHSHGIYNALYFIVAIVPFWIRFAQCIRRYLEEREATHAFNTLKYLS TIIAVVLRTTFELKRGTARMALALASSAAAAAFNAYWDVAVDWGLLRRNSKNRFLRDRILVPRKSVYFVAMGVDVVLRLAWMQLVLELNLRSVHKMAALS VMSCLEIVRRGLWNFFRLENEHLNNVGKYRAFNSVPLPFSYCDPDDDDKDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004285 [exp]	0	1
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	1.4	0.8995
AT1G22590	MADS	AGL87	AGAMOUS-like 87 (.1.2)		Lus10023293 [exp]	2.0	0.8470
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	3.9	0.8429
					Lus10024617 [exp]	4.6	0.7650
					Lus10017936 [exp]	6.3	0.7921
AT3G51810		AT3, GEA1, ATEM...	GUANINE NUCLEOTIDE EXCHANGE FA...		Lus10000125 [exp]	6.6	0.6420
AT1G45688			unknown protein		Lus10023652 [exp]	9.5	0.6593
AT3G15280			unknown protein		Lus10005404 [exp]	11.2	0.7886
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Lus10016120 [exp]	11.6	0.7576
AT4G10265			Wound-responsive family protei...		Lus10039760 [exp]	16.2	0.6834

Compare expression of checked genes

Lus10004285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.