Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23490 606 / 0 unknown protein AT5G08440 599 / 0 unknown protein AT5G23510 293 / 6e-94 unknown protein AT3G03560 203 / 4e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019229 [exp] 1319 / 0 AT5G23490 667 / 0.0 unknown protein Lus10005694 [exp] 195 / 3e-54 AT3G03560 501 / 3e-174 unknown protein Lus10020297 [exp] 180 / 4e-47 AT3G03560 489 / 3e-164 unknown protein Lus10029154 [exp] 99 / 2e-24 AT5G23510 95 / 6e-25 unknown protein Lus10020293 [exp] 62 / 1e-09 AT5G35910 691 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133700 [exp] 728 / 0 AT5G23490 627 / 0.0 unknown protein Potri.013G073400 [exp] 229 / 2e-66 AT3G03560 568 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004286 pacid=23163601 polypeptide=Lus10004286 locus=Lus10004286.g ID=Lus10004286.BGIv1.0 annot-version=v1.0 ATGTCGGGGATGGAGCTCAGTAGTCGCGGCGGCGGGAATGAATTGGCGTCATCCAATTCGAATTTCTCCAACCACAACAGTGATAGCTTGTTTCAGGTAA TGAAGGCAGTTGAAGCGGCCGAAGCCACGATCAAACAGCAGGTAGAAGAAAATACTCGTTTGAGGGCTGAACTCCATAAGACGACCGAGGAGCTTGAGAA AGCTAAAATAGGTGAGCCCATGGCCCAAGGATCACATTCTACCCCTCCATGGAATGGACGGATTCAAAGTCCTTATGCAGTTTACCAGTCGGAATTGATA GGTAATCCTGAGGATAGGGCTAGGAGCATGAATAGCAACGCTGCAGTTGATCCATATGGTATGATGGTTTCTCATCAAGGGTCTAAGGTCGGTACTGAAG ATCGTCTAGAAAGCTATTCTGAAAGAAGCAACGTTAATGGGAGACTGAAGGCTTCTCCTGATGCTCATGCACCAGATGGTTCCAATGTCTCTCGGTTTTC TTCACCGTCCCTACCGTCTGTTTCTCCTGGGAGGTATCAAATGGAAGGAGACTATGAACCACAAGCCAATGTTTCTAGTCGTGGCACCATGCAAATGGCT GAAGTGAATAATTCCAATAGCCTTTTGAAGCAGGATTTTGCTTTCAAGATTCGCGAGCATGAAGAAGAGACAATACAATTACGGAAACGTCTTGCTGATT ATTCGGTCAAGGAAGCTCAAATTCGGAATGAAAAGTATGTTTTGGAGAAGCGTATTGCTTATATGCGTCTGGCTGCTCAACAAGAAAGATCGACATTTGT GTCTTCTCTGATGCCACTGCTAGCTGAGTATTCATTGCAGCCACCAGTCCCAGATGCTCAGTCAATTGTTAGCAATGTCAGGGTCCTATTCAGACATCTA CAAGAAAAGCTCATACTTACGGAGTCAAAGCTCAAGGAGTCCCAATATCAGTTGGCGCCATGGAATTCAGATGTGAGCCATTCTAATGTTACCTTGCAGT CCCCTGCTCATTTGGTCGGGGTTGACCTGGATAAGAATGGTCTTGAGTTGGTTCCTCAACAAACATATTCTCGTGTAAATGCACCAGTTACGTCTTCAGA TTCTCGAATAGCAACCGACTGGGATACCCCTAGTCATCAACAAAGCGGATTGGGAGGTGCTGGTGCCAAAAATCTCGACATGGATGATGCTGGGAGATAT TCACCTCTTGCAAGCAGGAATTCTGCTGCTCAAGATATGCCAGAACAATTTGCAATTACGAATGCCATGCAATATAACACAGAGAACACTAAACAAGTAA CATTTCGTGATTCTGTCAGCAATAGCGAGATGGATGACCTTGAAGCTGATGGTCAACAAAATGACAGAGAACTTCAGTCGAATTGGACATCAGGAACTCC CTACACTACTAATGTTGATGATCCTACCTCTTCGTATTCCCCTTATCTGCCTCCTGTCCTTGAAGAACCTTCTTCTTCATTTTCTGAGGCTGCCGATGAT GATCCTTTACCAGCGATCGAAGGCCTTCAAATTTCAGGTGAAGCATTTCCTGGGCATGAGCTACAGGCATCAGGGTACTCTATCAATGGAACAACTAGTT GTAATTTTGAGTGGGTACGTAATTTCGAAGATGGCTCTGTTGATTATATTGATGGAGCAAAACAACCAAACTATCTTGTCACTGCCGATGATGTCGATAC ATATCTTGCTATAGAAGTCCATCCCCTGGATGATCGTAAGCGCAAGGGAGAACTGGTCAAGGTCTTTGCAAATGAAAACAGAAAGATTGCTTGTGATGCT GAAATGCAGAGCCATATTGAGAGGACTCTTTCCAATGGTCATGCCACATACAAAGTTTCGTTATCAGCGAATTATCTCGACATTTGGGAACCAGCCACTT TGGTCATCAAGAGGGACAGTTACAACATCAAATGTACCATGCCTAACGGGGCTGTGATCAGTGAGAAGTTTTCATCCAAGACCAGTGTTTCTATCCCTTA TGGACATCCTACGGAGTTCGTTGTAAATGGTGCGACCGGAGGCCAGCATCTGCTACGAGCAGATAATGACTCTACAGAAGTTAGCTGTGTAAGAGATGCT ATTGTGCTTACCATGAGACTGTTCATCATAAAGGTACAAAAGGTGACATTCCTTCCTGATTCCTTTCTTATTCCTCTCGTCAAAAGATTATGA
AA sequence Show only first row Show all	>Lus10004286 pacid=23163601 polypeptide=Lus10004286 locus=Lus10004286.g ID=Lus10004286.BGIv1.0 annot-version=v1.0 MSGMELSSRGGGNELASSNSNFSNHNSDSLFQVMKAVEAAEATIKQQVEENTRLRAELHKTTEELEKAKIGEPMAQGSHSTPPWNGRIQSPYAVYQSELI GNPEDRARSMNSNAAVDPYGMMVSHQGSKVGTEDRLESYSERSNVNGRLKASPDAHAPDGSNVSRFSSPSLPSVSPGRYQMEGDYEPQANVSSRGTMQMA EVNNSNSLLKQDFAFKIREHEEETIQLRKRLADYSVKEAQIRNEKYVLEKRIAYMRLAAQQERSTFVSSLMPLLAEYSLQPPVPDAQSIVSNVRVLFRHL QEKLILTESKLKESQYQLAPWNSDVSHSNVTLQSPAHLVGVDLDKNGLELVPQQTYSRVNAPVTSSDSRIATDWDTPSHQQSGLGGAGAKNLDMDDAGRY SPLASRNSAAQDMPEQFAITNAMQYNTENTKQVTFRDSVSNSEMDDLEADGQQNDRELQSNWTSGTPYTTNVDDPTSSYSPYLPPVLEEPSSSFSEAADD DPLPAIEGLQISGEAFPGHELQASGYSINGTTSCNFEWVRNFEDGSVDYIDGAKQPNYLVTADDVDTYLAIEVHPLDDRKRKGELVKVFANENRKIACDA EMQSHIERTLSNGHATYKVSLSANYLDIWEPATLVIKRDSYNIKCTMPNGAVISEKFSSKTSVSIPYGHPTEFVVNGATGGQHLLRADNDSTEVSCVRDA IVLTMRLFIIKVQKVTFLPDSFLIPLVKRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23490			unknown protein		Lus10004286 [exp]	0	1
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10030817 [exp]	2.8	0.8471
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Lus10010955 [exp]	6.7	0.7815
AT4G02480			AAA-type ATPase family protein...		Lus10036347 [exp]	7.9	0.8141
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	8.8	0.7897
AT3G11910		AtUBP13, UBP13	ubiquitin-specific protease 13...		Lus10034130 [exp]	8.9	0.8348
AT5G65290			LMBR1-like membrane protein (....		Lus10035927 [exp]	9.2	0.7546
AT3G12010			unknown protein		Lus10021085 [exp]	9.5	0.7725
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10024136 [exp]	12.0	0.7583
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	12.0	0.7909
AT4G09680		ATCTC1	conserved telomere maintenance...		Lus10032880 [exp]	12.0	0.7771

Compare expression of checked genes

Lus10004286 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.