Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20925 429 / 2e-148 Auxin efflux carrier family protein (.1) AT1G76520 413 / 4e-143 Auxin efflux carrier family protein (.1.2) AT1G76530 348 / 3e-117 Auxin efflux carrier family protein (.1) AT2G17500 332 / 3e-111 Auxin efflux carrier family protein (.1.2.3.4) AT5G65980 327 / 4e-109 Auxin efflux carrier family protein (.1) AT5G01990 178 / 2e-51 Auxin efflux carrier family protein (.1) AT1G71090 115 / 5e-28 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025166 [exp] 445 / 3e-155 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10016046 [exp] 390 / 2e-133 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 342 / 7e-115 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 337 / 5e-113 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 324 / 5e-108 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 305 / 1e-94 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019229 [exp] 295 / 9e-91 AT5G23490 667 / 0.0 unknown protein Lus10030715 [exp] 276 / 3e-89 AT1G20925 295 / 6e-96 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 187 / 1e-52 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G003500 [exp] 450 / 2e-157 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.003G108100 [exp] 441 / 9e-154 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.001G456300 [exp] 438 / 2e-152 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 429 / 4e-149 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 407 / 9e-141 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 396 / 4e-136 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.005G099300 [exp] 335 / 3e-112 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.001G125501 [exp] 293 / 3e-95 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.016G141700 [exp] 178 / 2e-51 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 174 / 8e-50 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10004287 pacid=23163611 polypeptide=Lus10004287 locus=Lus10004287.g ID=Lus10004287.BGIv1.0 annot-version=v1.0 ATGGCGGCTGGGAGGATTCTGGACCTGTTGGTAGCCTCCCTTATGCCGGTTCTCAAGCTGCTCATCGTCACCGGAGTCGGCTCGTTGCTCGCCGTTGATG CTGTTGATATCTTGGGGATCGATGCTCGTAAGCACTTGAACAATGTGGTGTTTTATGTCTTCAGTCCAGCTCTAGTTGGTAGCAGTCTGGCAAAGTACAT GACACTTAAGAATGTCGTTTTGATGTGGTTCATGCCACTCAATATTCTCTTCTCATTCATTGTCGGATCGCTACTCGGGTGGTTACTCGTCCAAGTAACC CGACCTCCTCGTGCTATTCGAGGTGTGGTGCTCGGATGTTGTGCTGCAGGAAACCTGGGGAACATGCTTCTAATCTTTATCCCGGCAGTTTGCCAAGAGA AAGGCTCTCCCTTTGGAGATGTGGAGACTTGCAATGGAATTGGTTTGGCCTATGGATCGCTCTCTATGGCCGTTGGAGTCGTCTACATGTGGTCTTATGT GTTCTACATCATGCGTCGCTACGCGACCGTAACATCGGAACCTGAAGCCACAGACACTACTGCTCTCGAAGGACTTCCGAAATCCTCGCCAATAGATGAG GGCCATAGTGGATTGGAACTTGTTCCCATGCCTGCACCATTGCAACAGAAAGAAAAAGTTATTGAAATTCGGCCAGATTCGATTAAGGTACCAGTACCAA TATTCTTGGAGAAGATGAAGCTGGGCATACAGAGTTTTGGTACAATGTTCAACTTCAAGGCATTGTTTGCTCCTTCGACTATCGGCGCGATTGTTGGATT CGCAGTGGGACTAATTCCTCATATGCAAGGCTTGCTGGTTGGTGATAAGGCTCCCCTACGAGTTATTGAAGAATCAGCTTCTCTGCTAGGAGACGCTGCT ATTCCGACAATCACATTGCTCGTGGGAGCGAATCTCGTCAAAGGTCTGAAAGGGTCTGATGTACGGCCACCCGTGATTATCGGGATCATGGCGATACGAT ACATTGTGCTCCCACTGACCGGAATCGGCATTGTGAAGTCAGCAGTGCGTCTGGGACTCGTGCATAGAGATCCGCTCTATCAGTTTGTTCTTCTGCTTCA GTTTGCAGTTCCTCCGGCAATAAACATTGGTACAATAAGCCAATTGTTCGGGACTGGGGAGAGCGAGTGTTCGGTGATTCTGCTGGTAAGTTTCGCTCTA GCATCAGTTGCGGTCACGATTTGGTCAGCAATCTTCATGTGGATGGTAGCATAG
AA sequence Show only first row Show all	>Lus10004287 pacid=23163611 polypeptide=Lus10004287 locus=Lus10004287.g ID=Lus10004287.BGIv1.0 annot-version=v1.0 MAAGRILDLLVASLMPVLKLLIVTGVGSLLAVDAVDILGIDARKHLNNVVFYVFSPALVGSSLAKYMTLKNVVLMWFMPLNILFSFIVGSLLGWLLVQVT RPPRAIRGVVLGCCAAGNLGNMLLIFIPAVCQEKGSPFGDVETCNGIGLAYGSLSMAVGVVYMWSYVFYIMRRYATVTSEPEATDTTALEGLPKSSPIDE GHSGLELVPMPAPLQQKEKVIEIRPDSIKVPVPIFLEKMKLGIQSFGTMFNFKALFAPSTIGAIVGFAVGLIPHMQGLLVGDKAPLRVIEESASLLGDAA IPTITLLVGANLVKGLKGSDVRPPVIIGIMAIRYIVLPLTGIGIVKSAVRLGLVHRDPLYQFVLLLQFAVPPAINIGTISQLFGTGESECSVILLVSFAL ASVAVTIWSAIFMWMVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20925			Auxin efflux carrier family pr...		Lus10004287 [exp]	0	1
AT4G35890			winged-helix DNA-binding trans...		Lus10025952 [exp]	3.0	0.7541
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004322 [exp]	9.9	0.7402
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10020786 [exp]	13.1	0.7678
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10029762 [exp]	15.9	0.7606
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10021222 [exp]	21.2	0.7162
AT1G05020			ENTH/ANTH/VHS superfamily prot...		Lus10035340 [exp]	27.0	0.7397
					Lus10039897 [exp]	29.5	0.7434
AT4G21865			unknown protein		Lus10000264 [exp]	31.3	0.6114
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10022596 [exp]	33.8	0.7477
AT3G27470			Protein of unknown function (D...		Lus10022287 [exp]	33.8	0.7078

Compare expression of checked genes

Lus10004287 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.