Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04290 226 / 5e-77 Thioesterase superfamily protein (.1) AT2G29590 95 / 4e-25 Thioesterase superfamily protein (.1) AT3G61200 66 / 7e-14 Thioesterase superfamily protein (.1) AT1G52191 59 / 1e-11 Thioesterase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019228 [exp] 313 / 2e-111 AT1G04290 228 / 1e-77 Thioesterase superfamily protein (.1) Lus10018205 [exp] 95 / 3e-25 AT2G29590 206 / 6e-69 Thioesterase superfamily protein (.1) Lus10040701 [exp] 90 / 3e-23 AT2G29590 200 / 7e-67 Thioesterase superfamily protein (.1) Lus10018847 [exp] 76 / 9e-18 AT3G61200 149 / 4e-46 Thioesterase superfamily protein (.1) Lus10000809 [exp] 73 / 6e-16 AT3G61200 135 / 3e-39 Thioesterase superfamily protein (.1) Lus10006834 [exp] 71 / 8e-16 AT3G16175 102 / 4e-28 Thioesterase superfamily protein (.1) Lus10037583 [exp] 65 / 2e-13 AT3G16175 107 / 4e-30 Thioesterase superfamily protein (.1) Lus10006837 [exp] 62 / 1e-12 AT3G16175 114 / 5e-33 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134066 [exp] 268 / 8e-94 AT1G04290 200 / 8e-67 Thioesterase superfamily protein (.1) Potri.004G134132 [exp] 233 / 1e-79 AT1G04290 166 / 2e-53 Thioesterase superfamily protein (.1) Potri.009G042100 [exp] 91 / 8e-24 AT2G29590 177 / 8e-58 Thioesterase superfamily protein (.1) Potri.002G155500 [exp] 72 / 3e-16 AT3G61200 139 / 4e-42 Thioesterase superfamily protein (.1) Potri.003G051900 [exp] 57 / 6e-11 AT3G16175 125 / 2e-37 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10004288 pacid=23163626 polypeptide=Lus10004288 locus=Lus10004288.g ID=Lus10004288.BGIv1.0 annot-version=v1.0 ATGGATTTGGAGAGCGTAAGGAGGTATCTGGAGAAAGGAAGCGGCATCATCAAAGACGATGGCGAAGACGACAAGAACAGATCAGCCATCGAAGCCATTC CTTACAGGTTCTTCGAACGTTTCATCATGCAAGGTCTCCAAGTCGATCTCGTCGAACCCGGCCGCGTCATTTGCTCCATGAAAGTCCCACCTCGTCTCCT GAACGGCGGGAACTTCTTGCACGGCGGAGCTACAGCGACTCTGGTTGATTTGGTTGGATCAGCTGTGATATTCACTGTTGGAGTTCCCCAGACTGGAGTC TCTGTTGAAATCAACGTTTCATATTTGGATGCTGCTTATGTTGATGAAGAGATCGAGATTGAAGCTAAGATTCTGCGAGTTGGGAAGGCAGTTGGAGTCG TGAGCGTAGAGTTGAGGAAGAAGAAGACCGGGAAACTCATCGCGCAGGGGCGTCATACCAAGTATCTTGCTGTATCTAGCAAATTGTAA
AA sequence Show only first row Show all	>Lus10004288 pacid=23163626 polypeptide=Lus10004288 locus=Lus10004288.g ID=Lus10004288.BGIv1.0 annot-version=v1.0 MDLESVRRYLEKGSGIIKDDGEDDKNRSAIEAIPYRFFERFIMQGLQVDLVEPGRVICSMKVPPRLLNGGNFLHGGATATLVDLVGSAVIFTVGVPQTGV SVEINVSYLDAAYVDEEIEIEAKILRVGKAVGVVSVELRKKKTGKLIAQGRHTKYLAVSSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04290			Thioesterase superfamily prote...		Lus10004288 [exp]	0	1
AT5G65270		AtRABA4a	RAB GTPase homolog A4A (.1)		Lus10035924 [exp]	3.2	0.8675
AT1G15270			Translation machinery associat...		Lus10037543 [exp]	3.5	0.8951
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	3.9	0.8872
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	4.5	0.8871
AT2G29960		CYP19-4, ATCYP5...	CYCLOPHILIN 19-4, ARABIDOPSIS ...		Lus10018238 [exp]	4.9	0.8733
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10038835 [exp]	5.3	0.8743
AT3G23490		CYN	cyanase (.1)		Lus10042087 [exp]	6.1	0.8402
AT3G03070			NADH-ubiquinone oxidoreductase...		Lus10039147 [exp]	7.2	0.8642
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10010188 [exp]	7.4	0.8675
AT3G45020			Ribosomal L18p/L5e family prot...		Lus10021433 [exp]	7.7	0.8765

Compare expression of checked genes

Lus10004288 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.