Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30390 710 / 0 FC2, FC-II, ATFC-II ferrochelatase 2 (.1.2) AT5G26030 491 / 4e-171 FC1, FC-I, ATFC-I ferrochelatase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019224 [exp] 921 / 0 AT2G30390 729 / 0.0 ferrochelatase 2 (.1.2) Lus10023607 [exp] 498 / 1e-173 AT5G26030 652 / 0.0 ferrochelatase 1 (.1.2) Lus10024237 [exp] 495 / 1e-172 AT5G26030 650 / 0.0 ferrochelatase 1 (.1.2) Lus10007924 [exp] 497 / 2e-172 AT5G26030 640 / 0.0 ferrochelatase 1 (.1.2) Lus10013461 [exp] 358 / 9e-120 AT5G26030 473 / 1e-165 ferrochelatase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T010900 [exp] 775 / 0 AT2G30390 756 / 0.0 ferrochelatase 2 (.1.2) Potri.T010901 [exp] 773 / 0 AT2G30390 734 / 0.0 ferrochelatase 2 (.1.2) Potri.004G138400 [exp] 768 / 0 AT2G30390 747 / 0.0 ferrochelatase 2 (.1.2) Potri.006G232100 [exp] 496 / 5e-173 AT5G26030 620 / 0.0 ferrochelatase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0043 [flax] [poplar] Chelatase PF00762 [flax] [poplar] Ferrochelatase Ferrochelatase
Representative CDS sequence Show only first row Show all	>Lus10004292 pacid=23163605 polypeptide=Lus10004292 locus=Lus10004292.g ID=Lus10004292.BGIv1.0 annot-version=v1.0 ATGAATTCTCGACTAACCTACGCCGTTTCAACTCCGTCTCCTGCTTCTTCCTCTTCTTACACAGCTCAACACATCTCGAGATCCCCCATGATATTACCAC GGCCAGTTTCTGTATCACCGAGGTTGCAATGCTCATCTGCTTTCCACGTTGATAGTTCCCTTACTTCTTACCCCAATAAAAGCCACGTCATCTCCAAGTG TTCTTTAAGCGGCTCACTACAACAGCAACTTGATAATAAATGTACTAGATGGCCATTGAGAGCGTTGGTGACCTCAACAGCTCAAGACATCTCAGTAGCA TCTCTAATTGGCAATGAGAAGATTGGAGTCCTGTTGCTGAATCTCGGAGGCCCTGAGACTCTCGACGATGTCCAGCCTTTCCTGTTTAACCTTTTTGCAG ACCCTGATATCATACGGCTTCCAAGGGTGTTTCGCTTTCTGCAAAAGCCTCTGGCTCAGTTCATATCAGTTGTTAGAGCTCCCAAGAGCAAGGAAGGCTA CGCTTCAATCGGTGGCGGTTCTCCTCTGCGACAGATAACTGATGCTCAGGCATTATTCATCTTCACTCAGGGAGAAGCATTGAGAAAGTCCCTTTGGGAG AAGGATGTTCCTTCTAAAGTCTATGTTGGCATGCGTTACTGGCATCCGTTCACTGAAGAAGCAATAGAACAGATAAAGAGAGACGGCATTTCAAAACTTG TGGTGCTTCCATTGTATCCACAGTTTTCGATATCAACTAGCGGCTCCAGCCTTCGACTCTTGGAGAGTATATTCCGGTCAGATGAGTACCTTGTGAACAT GCAGCACACAGTGATTCCATCCTGGTACCAGCGTGAAGGATACATTAAAGCCATGGTCGTGATATTCTTCAGTGCACATGGAGTGCCACTAGCATATGTG GAAGAGGCTGGTGATCCATACAAGGCAGAAATGGAGGAATGTGTGGACTTGATTATGGATGAATTAGAGAAGAGAAAGCTTGCTAACTCATACACTCTTG CCTATCAGAGCAGAGTTGGACCTGTGGAGTGGCTGAAACCTTATACTGACGAGACTATAATTGATCTCGGGAGAAAAGGGGTCAAAAGTCTTCTCGCTGT CCCTATAAGTTTCGTTAGTGAACACATCGAAACCCTGGAAGAGATCGACGTTGAGTACAAGGAGTTGGCTCTGGAGTCCGGCATAGAAAACTGGGGACGT GTTCCTGCACTGGGATGTGAACCAACCTTCATCTCAGACCTGGCAGATGCTGTGATAGAGAGCCTCCCTTATGTCGGAGCCATGGCAGTATCTAATCTCG AAGCTCGACAGTCTTTAGTTCCCCTGGGCAGCGTCGAGGAGCTGCTGGCAGCTTACGATTCAAAACGGAGGGAGCTGCCACCGCCGGTGATGGTATGGGA ATGGGGATGGACAAAAAGTGCAGAGACTTGGAATGGGAGAGCAGCTATGTTGGCATTTCTGCTTCTCTTGTTCTTAGAAGTCACCACTGGAGAAGGTTTC CTGCATCAGATTGGTGTCTTGCCTTTGTTCCACTAA
AA sequence Show only first row Show all	>Lus10004292 pacid=23163605 polypeptide=Lus10004292 locus=Lus10004292.g ID=Lus10004292.BGIv1.0 annot-version=v1.0 MNSRLTYAVSTPSPASSSSYTAQHISRSPMILPRPVSVSPRLQCSSAFHVDSSLTSYPNKSHVISKCSLSGSLQQQLDNKCTRWPLRALVTSTAQDISVA SLIGNEKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRVFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRQITDAQALFIFTQGEALRKSLWE KDVPSKVYVGMRYWHPFTEEAIEQIKRDGISKLVVLPLYPQFSISTSGSSLRLLESIFRSDEYLVNMQHTVIPSWYQREGYIKAMVVIFFSAHGVPLAYV EEAGDPYKAEMEECVDLIMDELEKRKLANSYTLAYQSRVGPVEWLKPYTDETIIDLGRKGVKSLLAVPISFVSEHIETLEEIDVEYKELALESGIENWGR VPALGCEPTFISDLADAVIESLPYVGAMAVSNLEARQSLVPLGSVEELLAAYDSKRRELPPPVMVWEWGWTKSAETWNGRAAMLAFLLLLFLEVTTGEGF LHQIGVLPLFH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10004292 [exp]	0	1
AT2G30390		FC2, FC-II, ATF...	ferrochelatase 2 (.1.2)		Lus10019224 [exp]	1.0	0.9647
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10001560 [exp]	3.2	0.9121
AT1G69830		ATAMY3, AMY3	alpha-amylase-like 3 (.1)		Lus10036717 [exp]	7.5	0.8832
AT2G39190		ATATH8	Protein kinase superfamily pro...		Lus10023508 [exp]	7.7	0.8925
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027577 [exp]	11.3	0.8713
AT5G14260			Rubisco methyltransferase fami...		Lus10041585 [exp]	12.2	0.8867
					Lus10018660 [exp]	14.0	0.8570
AT5G02440			unknown protein		Lus10024400 [exp]	14.4	0.8648
AT1G29240			Protein of unknown function (D...		Lus10007276 [exp]	15.2	0.8477
AT1G03160		FZL	FZO-like (.1.2)		Lus10014666 [exp]	16.7	0.8907

Compare expression of checked genes

Lus10004292 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.