Plant FIBer expression Database

Lus10004294 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019222
[exp]
263 / 8e-84 ND /
Lus10019221
[exp]
265 / 1e-82 ND /
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G133300
[exp]
661 / 0 ND /
Potri.005G215200
[exp]
54 / 4e-07 AT5G19840 579 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Potri.006G071801
[exp]
46 / 3e-06 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0029 Cupin PF08007 Cupin_4 Cupin superfamily protein
Representative CDS sequence
>Lus10004294 pacid=23163598 polypeptide=Lus10004294 locus=Lus10004294.g ID=Lus10004294.BGIv1.0 annot-version=v1.0
ATGGCGGAGAGTAGAGTCCGCAAAAGGACGAAGATCACGAAACAATCTAGCTCACCATCGCCACCGCTCCGCCTTCACGACGACATCGCGATTGATGACT
CCACCGTTTATCCGCTGCTACTAGCAGCACTCGCCGACGAACGCAGTACAAATTCCCACCGATCCTTGATTCGCCGCTGCTTAATCCATCTCCGTTCATC
TCTTATCTCACTGTCTCCACCGCAGCTGGAACTTCCCATTTCCACCTTCCTCTCTTTGATTCCGCTTCTCCTCGTTTCCAAGTATGGAGACATTGCTCGC
CTCGCAGCGGAGACTCTAGGTGCAGCATCCCTTTGTTCTCTGGAAACGAATGAAGAAATTGCAATGGATGATGTTGTTGTCAGGGCTCTAGTCCATGTTC
TCTCGCGAAGTTCCAGGACGAAAGTTCCGTTGGCTGCTTGTAATGCCATCTTGGATTTGTCTACTTCTTCTGCTGGAAGGCAACGGCTGCTTGAGTTCTC
TGCCTTGAATTGCCTTATTTCTAAATGCTTGCAGCTACCTGTATCAACGTCGGTGGTGTCATTGTTGAGTAAAGGTAGGGCAAGAAGAAAGAGCAAGTTA
GCTTTGAAAGAAGATCAGTATGCTGTCTCACTTCTTCATGCCGTAATAACTCTAGTCAATGCATCTGATGTTGAAGATTTGGAGAAGATTTGTGCGAAGG
ATGTGCAAATATTTTTGGCTTATTTGAGAAATCTCTGGGCAGAGGTGCATAATCAGGTGTTGCATGGATTAAGCTTAATACCTGGGGTTAATGGTCTGGC
TCAGTGCATTTTTAAGCTCTCTCTTACTACTAGACAGTTTGCGGCATTGCCATATGCATTTGTAAAGAGGGGAATGTTTGGTTCTGATGAATCTAGCTTT
GAAGTTTTCTTGTCAAGTCAATGGGAGAATTCCCCTGGAAGGATCAGAAGCCAGTCTAGCCCTTTGACTGAGAAAGATGAAATATTGGGCTCCTTTGCTG
AAGTTCTAGGTTGTACAGAATCATTTCCTGATTTTCTTTCATCAATGCTTCACGGTTTTGTTTCTTGCTTACCTATTGATTCAGATGAGTTAGACATATA
TAGTTTTCTGGAGGAGGTGAAAAACGAGCTAGGCTGCCTGATGGTTTACCAGCAAGACTTGAGGGTGCTAAGAACAGAAAGCCAGTCAAACTCAAAAGCA
GAGGTGCATTTTTTTAACAGAACCTCAAGTGATTACTACACTAAGCCCCCCGGTTTCCTCAGCAGTTCTGATATAGAAAAATGTGAAGAAGCGTACCGGC
ACGGTTATACAGTTGCTATTCGCGGCATGGAATTCCGCTATAAATGCATAGCAGCTATTACAGAGGCTTTAGCATCTTTGTTTGGTCAACCATCTGTAGG
GGCCAATCTGTACTTAACCCCACCTCAATCTCAAGGTCTGGCTTGCCATTTTGATGACCACTGTGTATTTGTATGCCAACTCTTGGGTGCGAAACAATGG
ACCACCTATCCTCCAAAGATGCAATTGCCGCGGCTATATGACCAACTTGATGGAAAACTTGGTTCAAATGCTGAGTGCTCGCTGGATGGATGCAGGAAGT
TCTTGCTCAGCGAAGGCGACTTATTGTATATTCCAAGAGGCTATCCACATGAAGCTTGTACCGACGATGCTATTGCTGATGTTGTTACCAAATTTTCCTT
ACATCTCACATTTGGTATTGAGGTGGAACCTCCTTTCGAGTGGGAAGGGTTTATGCATGTTTCACTTCGTGTTTGGTATCTGAGATGGAAGCAGTACGAT
CGGGGTTTTTCTGAACCATTGACTTTTAATCTAGGTGAAACGTCCATGACTTTATTTCATGCACTGATTAGTGTTCTTGGTGTTTCTGATCCAACTTTTC
GTAAGGCTTGCTTGGTTGGTACCCTTACTTCTCCACGCGACGTCGATGATTGGCTCTATTCAAACCAGAAGACCACATTTAAGGGGTTGGTTAACAAAAT
CAGCACAGGGCCCAACTTGCTGGAAGTGCTGAAGGAGGTGGAGAAAAGAGAGAACGTCTTTGAGAGGATGAGGTGGCTTCGTAATCTCGACTTTGAGGAA
ATAACGATGAAAGAACTTCACCGTGGGATAAATTTTACAGGAATCTTGGATCTGTCGGGTTTATATTCTGAACATAAGGACGCATTAGAAGCCACATTCT
TGTTATATAGAACCAGGTTCTGCAACGAAGCCTTGTTTGAGGATGCAATTGGTAGCTACAAAATGCTACTTGAGAAGTATAAGAAGGTTAGAAGTCAATA
CACCAATGGATTATTGTCTTTGCATCATTAA
AA sequence
>Lus10004294 pacid=23163598 polypeptide=Lus10004294 locus=Lus10004294.g ID=Lus10004294.BGIv1.0 annot-version=v1.0
MAESRVRKRTKITKQSSSPSPPLRLHDDIAIDDSTVYPLLLAALADERSTNSHRSLIRRCLIHLRSSLISLSPPQLELPISTFLSLIPLLLVSKYGDIAR
LAAETLGAASLCSLETNEEIAMDDVVVRALVHVLSRSSRTKVPLAACNAILDLSTSSAGRQRLLEFSALNCLISKCLQLPVSTSVVSLLSKGRARRKSKL
ALKEDQYAVSLLHAVITLVNASDVEDLEKICAKDVQIFLAYLRNLWAEVHNQVLHGLSLIPGVNGLAQCIFKLSLTTRQFAALPYAFVKRGMFGSDESSF
EVFLSSQWENSPGRIRSQSSPLTEKDEILGSFAEVLGCTESFPDFLSSMLHGFVSCLPIDSDELDIYSFLEEVKNELGCLMVYQQDLRVLRTESQSNSKA
EVHFFNRTSSDYYTKPPGFLSSSDIEKCEEAYRHGYTVAIRGMEFRYKCIAAITEALASLFGQPSVGANLYLTPPQSQGLACHFDDHCVFVCQLLGAKQW
TTYPPKMQLPRLYDQLDGKLGSNAECSLDGCRKFLLSEGDLLYIPRGYPHEACTDDAIADVVTKFSLHLTFGIEVEPPFEWEGFMHVSLRVWYLRWKQYD
RGFSEPLTFNLGETSMTLFHALISVLGVSDPTFRKACLVGTLTSPRDVDDWLYSNQKTTFKGLVNKISTGPNLLEVLKEVEKRENVFERMRWLRNLDFEE
ITMKELHRGINFTGILDLSGLYSEHKDALEATFLLYRTRFCNEALFEDAIGSYKMLLEKYKKVRSQYTNGLLSLHH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10004294
[exp]
0 1
AT1G08060 MOM1, MOM MORPHEUS MOLECULE 1, MORPHEUS ... Lus10041322
[exp]
3.5 0.9552
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Lus10041856
[exp]
3.9 0.9593
AT5G20320 DCL4, ATDCL4 dicer-like 4 (.1.2) Lus10019588
[exp]
5.5 0.9341
AT1G20960 EMB1507 embryo defective 1507, U5 smal... Lus10042628
[exp]
7.3 0.9458
AT2G05250 DNAJ heat shock N-terminal dom... Lus10001744
[exp]
10.1 0.9319
AT1G70640 octicosapeptide/Phox/Bem1p (PB... Lus10008047
[exp]
11.8 0.9373
AT4G35800 RNA_POL_II_LSRN... RNA polymerase II large subuni... Lus10028403
[exp]
12.8 0.9336
AT1G16800 P-loop containing nucleoside t... Lus10035717
[exp]
13.4 0.9402
AT5G22760 PHD finger family protein (.1) Lus10009383
[exp]
13.5 0.9330
Lus10021651
[exp]
14.4 0.9363

Lus10004294 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.