Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49160 1764 / 0 MET2, DMT1, DMT01, DDM2, METI, MET1 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) AT4G14140 1709 / 0 MET02, DMT2, DMT02, MET2 DNA METHYLTRANSFERASE 02, DNA methyltransferase 2 (.1.2) AT4G08990 1697 / 0 DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G13610 1510 / 0 MEE57 maternal effect embryo arrest 57, DNA (cytosine-5-)-methyltransferase family protein (.1) AT4G19020 222 / 3e-58 CMT2 chromomethylase 2 (.1) AT1G69770 215 / 2e-57 CMT3 chromomethylase 3 (.1) AT1G80740 196 / 2e-51 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019220 [exp] 2924 / 0 AT5G49160 1706 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Lus10010796 [exp] 217 / 7e-59 AT4G19020 790 / 0.0 chromomethylase 2 (.1) Lus10014315 [exp] 216 / 2e-57 AT1G69770 836 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 213 / 1e-56 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10017720 [exp] 211 / 7e-56 AT1G69770 855 / 0.0 chromomethylase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G134000 [exp] 2166 / 0 AT5G49160 1805 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.018G138000 [exp] 2160 / 0 AT5G49160 1800 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.T046100 [exp] 2160 / 0 AT5G49160 1802 / 0.0 METHYLTRANSFERASE I, METHYLTRANSFERASE 2, DNA METHYLTRANSFERASE 1, DNA METHYLTRANSFERASE 01, DECREASED DNA METHYLATION 2, methyltransferase 1 (.1) Potri.001G009600 [exp] 215 / 8e-57 AT1G69770 852 / 0.0 chromomethylase 3 (.1) Potri.003G100000 [exp] 215 / 2e-56 AT4G19020 1017 / 0.0 chromomethylase 2 (.1) Potri.003G215800 [exp] 84 / 4e-16 AT1G69770 221 / 7e-62 chromomethylase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain PF12047 [flax] [poplar] DNMT1-RFD Cytosine specific DNA methyltransferase replication foci domain CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase
Representative CDS sequence Show only first row Show all	>Lus10004295 pacid=23163614 polypeptide=Lus10004295 locus=Lus10004295.g ID=Lus10004295.BGIv1.0 annot-version=v1.0 ATGGGCTCTGCGTCGAAGTTGATCTCGACAGCGCCTGATCCGGAAGCAGAGGATCCGTCATTGGCTGAATCAGGGAAGAACAAGAAGAATCAAGACAATA AGGCAATTCCTTCAGATTCCAAACCTAAAAAGGCAGCACCAAGCACTAAAGGAACGAAGAAGCGTGAAACTGCAAAAAACAATGAACCTCGTGCTTCTCC ACCGAAGCGGCCGAGAAGGGCTGCTGCATGTGTGAATCTGAAGGAGAAATCCGTGAAGCTGACTGATGAGTACACAGTTATCGAACCGAAGAAGGAGCAA GTTGTTCAGGAGGAACTTCTCGCCGTTAGATTGACCGAGGGACAAGGAGAGGACGGTCGTCCGAATAGAAGACTGACTGATTTCATCGTCCATGATGCAG ATTTCGCTCCACAGTATCTGGAGATGATTGAAGTTAGTGATATGTTTATCTCTGGTGTCATATTACCGATCGATGATTGTATGGGGGATGACAAAGAGAA GCGGGTGAGGTGTGAAGGGTCTCAAAGGATAGAGCAATGGGACATTTCTGGATATGAAGATGGCTCTCCGGTTGTGTGGCTGTCTACTAATATTGCCGAT TACCATTGTGTCAAACCTGCAGGCGGCTACCGGAAGGTTTACGATCGGTTTTTTGAGAAAGCTCGAGCTTGTATAGAAGTGTACAAGAAGCTGTCGAAAT CTGCTGGTGGGAATCCTGACCTCAGCCTTGATGAGTTGCTTGCTGGGCTTGTTCGTTCTTTTGGCAGTAGCAAGTGCTTTTCTGGGGCATCATCTATTAA AGAGTTTCTTATCTCACAAGGTGAGTTCATATACGATCAACTGAAAGGTTTAGATGAGACATCGAAGCAGAATGATATGAAGTTCTCAGAGCTGCCTGTG CTTTTGGCTTTAAGAGATAAGAGCAAGAAACATGAGAGTTTCATACTGGAAGGAGCAGTTGGCTATGGTGGTAGTGGGACGTTGGTTATTGAACCAAATG CTGATAAGAAAGACACAAAGATGGATGAAGTAAATGGATCTGCTGGTAATGATGAGGATGAGGACGCAAAATTAGCCCGGATGCTGCAGCAGGAAGAATT ATGGGCATCCATGAAGCAGAAGAAAAGAAAAGGCTCATCCATGTCGAATGCTATCTACATTAAGGTCAATGAAAGAGATATTGCGAATGATTATCCTCTC CCTGCATACTACAAGCAAACTGTTGAAGAAACTGATGAGTATATAGCCGTTGACTGTGATGATGTGATCAACCCTGATGACCTACCAAGAAAAGTGCTTC ATAATTGGTCACTTTATGATTCAGATTTACGGTTCATGTCCTTGGAGCTTCTCCCAATGAGACCGTGTGAAGATATTGACATCACCATCTTTGGGTCTGG TTTGATGACTGAAGATGACGGGGCAGGATTCTGCCTTGAAGACGATCCTGATCAATCTTCTTCGGGTGCTTCAGGTTCGCCTGATGAGACGGGATTGCCA ATTTTTTTGAGTGCTATAAAGGAATGGATGATTGAGTTCGGGGCTTCCATGGTTTTTGTATCAATTCGCACAGATATGGCCTGGTACAGACTTGGGAAGC CGTCAGCACAATATGCACCATGGTTTAAGATTGTTCTCAAGACAGCAAAACTCGGAATTAGCATTATCTCATTATTAAAGGAGCAAAGTCGAGTATCGAA ACTTTCTTTTGCAGAAGTAGTTAAGAAAGTTTCGGAGTTCAAGAAGGATAATGATGGCTATATTTCCTCTGACGTGGCCGTTGCTGAGAGATTTGCTGTT GTGCATGGGCAGATACTAGTACAACTCTTTGCTGAATTTCCTGATGCTAAAATCAAGAAAAGCGCATTTGTTACTGGCCTTACAAACAAAATGGAAGAGC GTAAACATACAAAATGGGTTGGTGGGAACAAGAAGCAACTGATTTTGCAGAGGGGCCAAGCTAATTTGAACCCTCAAGCTAACATGGGACCTGTAGTTTC CAAGAGGAAGGCTATGCAGGCTACGACAACAAGATTGATTAACAGAATCTGGGGAGAATACTATTCAAATTATTCGCCGGAGGATTTGCCAGAGGAAACA AATGAGAAGGTAAAAGAGGAACATGTCGTTGAGGAGCAGGAGGAAAATGAGGATGATGCTGACGAGGAGAAAGAGGAGACAATAGTTGTTACAGAGGAAG TGCAAAAACCATCCCCTGCATCAGTGAAAGTCCGATCATCATGCAAGTCGAATGTGGAAGCAAGATGGGAAGGTAATCCTGGAAAGGTAATTCTTGGTAA AACTATTTACAGTCGAGCTATCATCCATGGAGAGACCATTGAGGCTGGGAGTGCTGTCATGGTTGATGAAGATGATGATGATGACCTCCCTGCCATCTAC TTCATAGAGTATATGTACGAAACGAAAAATGGCGCCAAAATGGCTCATGGAAGAATGATGCAACGTGGTTCTGAGACTGTTCTTGGAAATGCATCCAACG AGAGAGAGGTCTTCTTAACAAACAACTGCTCAGATTTCCAACTGCAGGATGTTAAGCAGCTCGTTGTTGTCGAAATCCGGAAAATTCCGTGGGGTTATAA TCATAGGAAGGATCATTTGAATGCTGGCAGACAGGATAGAGCAAGGGCGGAAGAAAGGAAAAATAAAGGATTGCCTTTGGAGTATTACTGTAAAAGTTTG TATTGGCCGGAGAAGGGTGCTTTCTTCAGTCTTCCATCTGATGGCATGGGTCTTGGTTCTGGTATTTGCCAGTCGTGTAAGATTAACGAGGCTGACGAGG AGAAGTATACGTTTAAAGTGAATTCTTCAGGAGCGGGATTCTCGTGGGAAGGAGCTGAGTACTCCATCGACGACTTTGTTTATGTTCAGCCGGAGAACTT TGCCTTACGAAGAAAGGAAACTGGAACTTTTAAAGGTGGAAGGAATGTTGGTCTAGAAGCTTATGCTATATGCCAATTGGTGCAGATCATTGCAGGAAAG CAAGATACTGAAGAATCTACTCAGGTTGAAGTCCGAAGATTCTTCAGACCAGAGGACATTGCTTCTGAGAAAGCATATGGTTCCGATATCCGTGAGATAT ACTACAGCGAGGAAACACATACTTTACCTGTTGAGATGATAGAAGGGAAATGTGAAGTCAGAAAGAAAATTGACGTTCCTGCTTGTAATGTTACCACAGT TTTGGATCATATCTTCTTTTGTGAGCGTCTCTATGATCCTTCTAATGGTTCGCTTCGGCAGTTGCCAGCTAACACCAAACTAAGGTATTCCAGCCTTGGT GGCAATGGCGATGTTGCTTCTAGGAAGAGGAAGGGTAAAGGTAAAGAGGTTGAAGTTGATGAAGCAGTGGAGAAACCAAAGGAAGAATCTCAAGGAAACC TTTTGGCCACATTGGATATTTTTGCTGGCTGTGGTGGCTTATCAGAAGGGCTACGTCAAGCTGGTGTGTCTGTTACGAAGTGGGCTATCGAGTATGAGGA ACCAGCTGGTGAAGCATTCAGATTGAACCATCCTGAATCGCTGGTCTTCGTCAACAACTGTAATGTGATTCTTAAGGCTGTCATGGAGAAATGCGGTGAT ACAGATGACTGCATCTCAACTTCAGAGGCTGATGAATTGGCTGCTGCACTTGGTGAGAATGTCATCAAAGATTTACCTATGCCAGGACAAGTGGAATTCA TTAACGGAGGGCCTCCATGTCAGGGATTCTCTGGGATGAACAGGTTTAATCACAGCACATGGAGTAAGGTTCAATGTGAGATGATCTTAGCATTCCTATC CTTTGCCGATTACTTCAGACCTAAGTACTTCCTCCTGGAGAATGTGAGGAACTTTGTCTCCTTCAACAAAGGACAGACCTTTCGCTTAACCTTGGCTTCG CTTCTTGAAATGGGTTATCAGGTGAGATTTGGCATCTTGGAAGCTGGAACGTTTGGCGTTTCACAGTCACGAAAGCGTGCTTTCATATGGGCAGCTGCAC CAGACGAGGCTCTCCCCGAATGGCCTGAGCCTATGTATGTCTTCGGCGGGCCAGAATTGAAAGTCTCTCTGTCCAGCAAACTGCAGTACGCTGCTGCTAG AAGCACCGCTGGCGGAGCTCCTTTTAGAGCTGTAACTGTAAGAGACACAATCGGCGATCTCCCAGCTGTAACCAATGGTGCCTCGAAAGCAACTCTAGAG TATTCGAACGATCCAGTGTCGTGGTATCAGAAACAAATCCGAGCTAACATGGCTGTCCTCACTGACCACATATCAAAAGAAATGAATGAACTGAATCTCA TCCGATGCAAGAAGATTCCGAAGCGGCCTGGTGCTGATTGGCGTGATCTCCCGGAAGAAACGGTTACGTTGTCGAACGGACAGAAGGCTGATCTCATCCC GTGGTGCTTGCCAAACACGGCAGCTCGCCACAACCAGTGGAAAGGACTGTTTGGAAGGCTTGACTGGGATGGCAACTTCCCAACCTCGATCACCGATCCT CAACCTATGGGCAAAGTCGGGCTGTGCTTCCATCCTGATCAGGACAGGATCGTTACCGTCCGCGAGTGTGCTCGATCTCAAGGATTCCCCGATAGCTATC AGTTCTCTGGTAACATCATTAGCAAGCATCGTCAGATCGGAAATGCTGTGCCTCCGCCATTGGCCTATGCTTTGGGAAGGAAGCTGAAGGAAGCTGTTGG TAGTAAGAAGGCCATAGAGTCGAGTTCTGAGTAG
AA sequence Show only first row Show all	>Lus10004295 pacid=23163614 polypeptide=Lus10004295 locus=Lus10004295.g ID=Lus10004295.BGIv1.0 annot-version=v1.0 MGSASKLISTAPDPEAEDPSLAESGKNKKNQDNKAIPSDSKPKKAAPSTKGTKKRETAKNNEPRASPPKRPRRAAACVNLKEKSVKLTDEYTVIEPKKEQ VVQEELLAVRLTEGQGEDGRPNRRLTDFIVHDADFAPQYLEMIEVSDMFISGVILPIDDCMGDDKEKRVRCEGSQRIEQWDISGYEDGSPVVWLSTNIAD YHCVKPAGGYRKVYDRFFEKARACIEVYKKLSKSAGGNPDLSLDELLAGLVRSFGSSKCFSGASSIKEFLISQGEFIYDQLKGLDETSKQNDMKFSELPV LLALRDKSKKHESFILEGAVGYGGSGTLVIEPNADKKDTKMDEVNGSAGNDEDEDAKLARMLQQEELWASMKQKKRKGSSMSNAIYIKVNERDIANDYPL PAYYKQTVEETDEYIAVDCDDVINPDDLPRKVLHNWSLYDSDLRFMSLELLPMRPCEDIDITIFGSGLMTEDDGAGFCLEDDPDQSSSGASGSPDETGLP IFLSAIKEWMIEFGASMVFVSIRTDMAWYRLGKPSAQYAPWFKIVLKTAKLGISIISLLKEQSRVSKLSFAEVVKKVSEFKKDNDGYISSDVAVAERFAV VHGQILVQLFAEFPDAKIKKSAFVTGLTNKMEERKHTKWVGGNKKQLILQRGQANLNPQANMGPVVSKRKAMQATTTRLINRIWGEYYSNYSPEDLPEET NEKVKEEHVVEEQEENEDDADEEKEETIVVTEEVQKPSPASVKVRSSCKSNVEARWEGNPGKVILGKTIYSRAIIHGETIEAGSAVMVDEDDDDDLPAIY FIEYMYETKNGAKMAHGRMMQRGSETVLGNASNEREVFLTNNCSDFQLQDVKQLVVVEIRKIPWGYNHRKDHLNAGRQDRARAEERKNKGLPLEYYCKSL YWPEKGAFFSLPSDGMGLGSGICQSCKINEADEEKYTFKVNSSGAGFSWEGAEYSIDDFVYVQPENFALRRKETGTFKGGRNVGLEAYAICQLVQIIAGK QDTEESTQVEVRRFFRPEDIASEKAYGSDIREIYYSEETHTLPVEMIEGKCEVRKKIDVPACNVTTVLDHIFFCERLYDPSNGSLRQLPANTKLRYSSLG GNGDVASRKRKGKGKEVEVDEAVEKPKEESQGNLLATLDIFAGCGGLSEGLRQAGVSVTKWAIEYEEPAGEAFRLNHPESLVFVNNCNVILKAVMEKCGD TDDCISTSEADELAAALGENVIKDLPMPGQVEFINGGPPCQGFSGMNRFNHSTWSKVQCEMILAFLSFADYFRPKYFLLENVRNFVSFNKGQTFRLTLAS LLEMGYQVRFGILEAGTFGVSQSRKRAFIWAAAPDEALPEWPEPMYVFGGPELKVSLSSKLQYAAARSTAGGAPFRAVTVRDTIGDLPAVTNGASKATLE YSNDPVSWYQKQIRANMAVLTDHISKEMNELNLIRCKKIPKRPGADWRDLPEETVTLSNGQKADLIPWCLPNTAARHNQWKGLFGRLDWDGNFPTSITDP QPMGKVGLCFHPDQDRIVTVRECARSQGFPDSYQFSGNIISKHRQIGNAVPPPLAYALGRKLKEAVGSKKAIESSSE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Lus10004295 [exp]	0	1
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	1.4	0.9750
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Lus10036319 [exp]	1.4	0.9706
AT5G55820		WYR	WYRD, unknown protein		Lus10022519 [exp]	2.4	0.9654
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	4.6	0.9672
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10015267 [exp]	5.0	0.9495
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	7.1	0.9609
AT1G34355	FHA	ATPS1	PARALLEL SPINDLE 1, forkhead-a...		Lus10009434 [exp]	7.3	0.9609
AT3G51740		IMK2	inflorescence meristem recepto...		Lus10014235 [exp]	7.5	0.9658
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10001452 [exp]	8.0	0.9615
AT5G55830			Concanavalin A-like lectin pro...		Lus10016620 [exp]	8.1	0.9605

Compare expression of checked genes

Lus10004295 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.