Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23520 266 / 1e-85 smr (Small MutS Related) domain-containing protein (.1) AT2G26280 64 / 7e-11 CID7 CTC-interacting domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019219 [exp] 645 / 0 AT5G23520 303 / 8e-100 smr (Small MutS Related) domain-containing protein (.1) Lus10038081 [exp] 59 / 2e-09 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1) Lus10009796 [exp] 59 / 3e-09 AT2G26280 701 / 0.0 CTC-interacting domain 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T013000 [exp] 335 / 2e-112 AT5G23520 361 / 8e-122 smr (Small MutS Related) domain-containing protein (.1) Potri.018G145524 [exp] 101 / 5e-26 AT5G23520 86 / 2e-20 smr (Small MutS Related) domain-containing protein (.1) Potri.006G218900 [exp] 55 / 6e-08 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1) Potri.018G047700 [exp] 54 / 1e-07 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08590 [flax] [poplar] DUF1771 Domain of unknown function (DUF1771) PF01713 [flax] [poplar] Smr Smr domain
Representative CDS sequence Show only first row Show all	>Lus10004296 pacid=23163612 polypeptide=Lus10004296 locus=Lus10004296.g ID=Lus10004296.BGIv1.0 annot-version=v1.0 ATGTCTCAGGTCCCTTTTGGAAGAAATTTTGTCGGCCACTACTGTGATTATAAAAGAAGGGGACTTGGCTTCTTCTTAATTAACCCGATTTTGCGTACAC ACATGAAGCCGTCAAGGACGAGGGTTAAGTCCCCGGGATGGGCTGCCTTCAATCTCAAGCAACAAGAGAACGCCGGAGGTCAGCTTGAAAAAACTCGCAA TGATCCTTTCCCACCTGTTTCGGCTGCATCCACCTCGCTCGATTCGCGTGGGAATGGAGTCATTGCCAAAAAGAAGTTGTTTTCGTCGGTTCTTCTACCA ACTGCTGAATTCCCAACCCTGGTGCATAAGAAGGGGAATGATTTAGATAGTTCTCTTCAGAAGCTCAAAGAGCTCCACGGTTGGGCCGATAGTTCTTTGG TTGAAGATATCGTAGCGGCTGCAGATGGTGACGTTGAAAAGGCATCATCTTTGCTGAAAGAAATGTATGGTAATACTCCTTGCAATAATGGGAGGGATGA GGGTGTTGTTCTGTCAGGTAATACGACAGACCTTGCTGCAGAGATTGCCGATCTGAGTTCTACGATAGAGAATGCTCTAAGCGGTACTCGTCAGCCATTG CAATTTGATGATGCTACTATGAACATGGAACGGGTGCTGCAGCATTTGAGATCTATTCCATCCGAGCCGGAGTGGGAAGAGGATGATATCTATTTAAGCC GTCGAAAGGATGCAATAAAGATGATGAGATCAGCTTCCCAGCATTCCAGGGCAGCCACTAACGCCTTCCTAAGAAATGACCATATTTCCGCACGAGAACA TTCCTTGAAAGCACAAGGGGATTGGATGGCGGCAGAAAAACTCAACGCCAAAGCAGCCAGAGAGATCTTGAGTGTAAGAAACAACGGCGGTAATCCGTGG AAGCTAGACCTGCACGGCCTTCATGCATCAGAGGCTGTTCAAGCCTTGAAAGAACATCTGTACAAGATAGAGACTTTGCTTTCGGTAAATCGTGCACCTT CTCCCTGCGTAGGCAATCATAGCCGGGGTGAAGCTGCATTGCCAATTGCAGTGAGAAGCTTCCTTAATGAAAATGGTTACCGTTCCGATGAGACGAGGGC TGGTGTCATATCCGTTTGGCCTAAATTTCGGGTCAGGTGA
AA sequence Show only first row Show all	>Lus10004296 pacid=23163612 polypeptide=Lus10004296 locus=Lus10004296.g ID=Lus10004296.BGIv1.0 annot-version=v1.0 MSQVPFGRNFVGHYCDYKRRGLGFFLINPILRTHMKPSRTRVKSPGWAAFNLKQQENAGGQLEKTRNDPFPPVSAASTSLDSRGNGVIAKKKLFSSVLLP TAEFPTLVHKKGNDLDSSLQKLKELHGWADSSLVEDIVAAADGDVEKASSLLKEMYGNTPCNNGRDEGVVLSGNTTDLAAEIADLSSTIENALSGTRQPL QFDDATMNMERVLQHLRSIPSEPEWEEDDIYLSRRKDAIKMMRSASQHSRAATNAFLRNDHISAREHSLKAQGDWMAAEKLNAKAAREILSVRNNGGNPW KLDLHGLHASEAVQALKEHLYKIETLLSVNRAPSPCVGNHSRGEAALPIAVRSFLNENGYRSDETRAGVISVWPKFRVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23520			smr (Small MutS Related) domai...		Lus10004296 [exp]	0	1
AT3G03610			ELMO/CED-12 family protein (.1...		Lus10020344 [exp]	3.6	0.8639
AT1G50680	AP2_ERF		AP2/B3 transcription factor fa...		Lus10036282 [exp]	5.1	0.8793
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	17.5	0.8551
AT5G63460			SAP domain-containing protein ...		Lus10016762 [exp]	17.8	0.8719
AT2G04305			Magnesium transporter CorA-lik...		Lus10007098 [exp]	20.2	0.8671
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10019732 [exp]	21.5	0.8085
AT3G10260			Reticulon family protein (.1.2...		Lus10029822 [exp]	25.3	0.8772
AT5G43920			transducin family protein / WD...		Lus10011916 [exp]	27.7	0.8711
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	28.4	0.8646
AT2G04305			Magnesium transporter CorA-lik...		Lus10020472 [exp]	30.0	0.8369

Compare expression of checked genes

Lus10004296 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.