Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08450 130 / 1e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019217 [exp] 134 / 3e-37 AT5G08450 858 / 0.0 unknown protein Lus10004299 [exp] 131 / 4e-36 AT5G08450 852 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135800 [exp] 128 / 4e-35 AT5G08450 860 / 0.0 unknown protein Potri.T044700 [exp] 123 / 2e-33 AT5G08450 796 / 0.0 unknown protein Potri.018G145560 [exp] 122 / 4e-33 AT5G08450 801 / 0.0 unknown protein Potri.018G145552 [exp] 42 / 3e-06 AT5G08450 75 / 8e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004298 pacid=23163628 polypeptide=Lus10004298 locus=Lus10004298.g ID=Lus10004298.BGIv1.0 annot-version=v1.0 ATGACCTTTGTTACTGGCAAAGGACTTAATGAGCAACCTTATGCCTATACACGCTTGAAAAAGGGTGAAGTTCTATACTTGGAAACAGATTCTTGCAGAT CAATTTCGAAACCGATTCTTGAGCAAGTTTGTATGATATACAGTATCATATCTGTCTCAAATGCCATACTACGTTACAGGTACGAGCTGTGTTTAGATGA ACTATCTCGAAGTACTGGCGATGGTTTCCGGTGGTCGCAATGTAAGGGAGCCTTGCCGCAGAAGATGATGCGATCGTTCGGCATCCCACTTCCTCCGGAA CATGTTGAGGTGGTGGCGGAGAAGCTTGACTGGGAAGCTGATGTGCAGTGGTCGGAGACTGGTGTAGTGATAGCTGGGGAAGAGTATGCTTTAGCAAGGC TCTATTTTCTGTCTCCAAATTGA
AA sequence Show only first row Show all	>Lus10004298 pacid=23163628 polypeptide=Lus10004298 locus=Lus10004298.g ID=Lus10004298.BGIv1.0 annot-version=v1.0 MTFVTGKGLNEQPYAYTRLKKGEVLYLETDSCRSISKPILEQVCMIYSIISVSNAILRYRYELCLDELSRSTGDGFRWSQCKGALPQKMMRSFGIPLPPE HVEVVAEKLDWEADVQWSETGVVIAGEEYALARLYFLSPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08450			unknown protein		Lus10004298 [exp]	0	1
					Lus10013098 [exp]	3.0	0.7543
AT2G43280	FAR1_related		Far-red impaired responsive (F...		Lus10025517 [exp]	4.6	0.7813
AT1G73170			P-loop containing nucleoside t...		Lus10015985 [exp]	5.3	0.7882
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10024900 [exp]	8.0	0.7788
AT1G09920			TRAF-type zinc finger-related ...		Lus10042917 [exp]	9.3	0.7827
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	9.5	0.7675
					Lus10040545 [exp]	10.2	0.7560
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	11.4	0.7531
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	14.0	0.6704
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	14.7	0.7456

Compare expression of checked genes

Lus10004298 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.