Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08450 782 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019217 [exp] 1444 / 0 AT5G08450 858 / 0.0 unknown protein Lus10004298 [exp] 133 / 4e-36 AT5G08450 130 / 5e-36 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G135800 [exp] 1038 / 0 AT5G08450 860 / 0.0 unknown protein Potri.T044700 [exp] 998 / 0 AT5G08450 796 / 0.0 unknown protein Potri.018G145560 [exp] 984 / 0 AT5G08450 801 / 0.0 unknown protein Potri.T044400 [exp] 681 / 0 AT5G08450 523 / 7e-176 unknown protein Potri.018G145546 [exp] 414 / 1e-140 AT5G08450 386 / 8e-129 unknown protein Potri.018G145542 [exp] 266 / 5e-82 AT5G08450 142 / 3e-37 unknown protein Potri.018G145552 [exp] 77 / 2e-17 AT5G08450 75 / 8e-18 unknown protein Potri.018G136502 [exp] 65 / 6e-13 AT5G08450 44 / 6e-07 unknown protein Potri.018G145550 [exp] 0 / 1 AT4G15093 82 / 3e-20 catalytic LigB subunit of aromatic ring-opening dioxygenase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0513 [flax] [poplar] LCCL-domain PF08642 [flax] [poplar] Rxt3 Histone deacetylation protein Rxt3
Representative CDS sequence Show only first row Show all	>Lus10004299 pacid=23163621 polypeptide=Lus10004299 locus=Lus10004299.g ID=Lus10004299.BGIv1.0 annot-version=v1.0 ATGAGTGGAGTTCCCAAAAGATCTCATGAAGAGGGAGGAGCTCATTCCTCTACACCGGGAGGAACATACCCTAAAATTACTCAAGGAGTGGTTTCTAACG AGTACCATGCGCCGTATGATATATGCCAGGATTCTCGTATGGGGAAGATTTCTCGCGATGTAGACCGGAAATCGCCGCTTCATTCGGTGTACCGAATGCC GTCTGGTTCGAATGATTCTCATATGGAGACTACTCATCCTGTTGCTTCTGCTGGTAGCCGGGTGGAGTTAAGGGAGTCCAAGGACAGCAAGGAGCATCGC GATCAAAGGACTGAAGCAAGGGATGCTCAAAGTGTTAAACTGGAGAAGGATATGAGGGTAGAGGTTAGAAGAGATGATAATAAGCACGAAAGGGAAATGC ATAGTGATCCGAAAAATGAAGTGAAGTTGGAGAAGGATGGTTTGGTTCAGTCAGGAAGTAGTCAAGTGACTTGGAAAGAATCTAAAGAGTATCATAGAGG GAAAAGGTACTCTGAATCTGCTAATGTGCATGCCGATCCTTGGCATTTGTCGAGAGGAAATCCTCAAGCTCCACCTGTGATTAGTAAGGAAGGTCAAAAT GTTGAAGGCAGGGAGTATATAGAGGCACGTGAGGCAGTTGGTGAGAATAAAGTTGAGTCGAAGAACGAGGATAGGTGGAAGGATAAGGATAAGAAGAGGA AAGATGCCAAGTATAGGGAGTGGGGGGATAAGGAAAGAAACGATCGAAAGGCAAACTTCCAGATTGGTAACAGCAGTGGTGCTGATGTGAAAGACTCAGC AAGAGAGGAAAGAGAGCTGGAGAGGCTGGAAAGGGAAAGGAAGGATCTTTCTAAGGACAAGGAAAAACCAAAGGATCATATGAAACGAGAGTCGTGGAAT GGTGTGGAGAAAGAAAGCTCTCACGGTGAGAAAGATATGGGTGGTGATGTGTCTGTGAAAGTATCTAAGGTGGAGAACCCGGGTTTTGAACACAAAAAGG CAAAAGATCTTGATGCGTGGAAAAATATCGATAGGGAGAATAAAGAGAAGAGAAAAGAGAAGGAGGGTGATGTAGAAGGAGATAAACAACAAAAGCGTAT CAGGTTGGGTGAAAAGGAATCTGACGATGGATTGCCGGATGGTGAAGGAGGTAGTGAAAGGGAGCGCGAGGCTTTTAACTTCGGTGTTCAGCAGCGTAAG AGGATGCTAAGGACGAGGGGCAGTCCTCAAGTGGCTAATCTTGAGCCCCATTCTAAGGCGCATACTCAAGAAAATGAAGGATCCCAAGGCAAACCTGAGG TATCCACGGTGGTCTACAAAGTTGGAGAATGCATGCGGGATCTGATAAAAATGTGGAAAGAGTATGAATCAACTCAACCTGAAAAAAATGGGGATAGTAC TACTCATAATGGCCCCACTCTGGAAATTCGGATACCAGCAGAAAACATCACAGCTACAAACCGCCAAGTCAGAGGTGGCCAGCTTTGGGGGACGGATATA TACACCGATGACTCGGACCTCGTTGCTGTTCTTATGCACACGGGATATTGCCGGCCCACTGCTTCTCCTCCTCCACCGGCTATCCAAGAGTTACGCGCCA CCATAAGGGTTTTGGCACCACAAGATAGCTATACGTCAATGCTCAGAAATAATGTTCGCTCCCGTGCTTGGGGAGCCGGAATTGCTTGCAGCTACCGTGT GGAGCGCTGCTGCATTGTGAAGAAAGGAGGAGGAACTATCGATCTCGAGCCTTGTCTGTCGCATACATCAGCAGTCGAGCCTACTCTCGCTCCTGTTGCT GTCGAGCGGACGATGACCACAAGAGCTGCAGCTTCAAACGCATTACGACAACAAAGATTCGTTCGTGAAGTTACGATACAGTACAACCTCTGCAACGAGC CCTGGATAAAATACAGTATCAGTGTTGTTGCTGACAAAGGACTCAAAAAGCCACTCTATACATCTGCACGCTTGAAGAAGGGAGAAGTTCTGTATTTGGA AACCCATTCTTGCAGGTACGAACTGTGTTTTGCCGGGGAGAAGATGGTACGAGCTTCGCAAGCAGCGCAGCAGCACGAAGACACAGACAAGTCATCGTCT CAAATTCGTCCTCCACATTCTTCCAACGGCGACAACTCCGACACCAGCAATGTTCTAATCGATGCTTTCCGGTGGTCTCGATGCAAGAGGCCCTTACCTC AGAAGTTGATGCGATCCGTCGGGATCCCACTTCCTCTTGAGCATGTTGAGGTGGTGGCGGAGAACCTTGACTGGGAAGACGTGCAGTGGTCGCAGACGGG TGTGTTGATAGCTGAGAAAGACTACACTCTAGCTAGGGTTCATTTTCTGTCTCCAAGTTGA
AA sequence Show only first row Show all	>Lus10004299 pacid=23163621 polypeptide=Lus10004299 locus=Lus10004299.g ID=Lus10004299.BGIv1.0 annot-version=v1.0 MSGVPKRSHEEGGAHSSTPGGTYPKITQGVVSNEYHAPYDICQDSRMGKISRDVDRKSPLHSVYRMPSGSNDSHMETTHPVASAGSRVELRESKDSKEHR DQRTEARDAQSVKLEKDMRVEVRRDDNKHEREMHSDPKNEVKLEKDGLVQSGSSQVTWKESKEYHRGKRYSESANVHADPWHLSRGNPQAPPVISKEGQN VEGREYIEAREAVGENKVESKNEDRWKDKDKKRKDAKYREWGDKERNDRKANFQIGNSSGADVKDSAREERELERLERERKDLSKDKEKPKDHMKRESWN GVEKESSHGEKDMGGDVSVKVSKVENPGFEHKKAKDLDAWKNIDRENKEKRKEKEGDVEGDKQQKRIRLGEKESDDGLPDGEGGSEREREAFNFGVQQRK RMLRTRGSPQVANLEPHSKAHTQENEGSQGKPEVSTVVYKVGECMRDLIKMWKEYESTQPEKNGDSTTHNGPTLEIRIPAENITATNRQVRGGQLWGTDI YTDDSDLVAVLMHTGYCRPTASPPPPAIQELRATIRVLAPQDSYTSMLRNNVRSRAWGAGIACSYRVERCCIVKKGGGTIDLEPCLSHTSAVEPTLAPVA VERTMTTRAAASNALRQQRFVREVTIQYNLCNEPWIKYSISVVADKGLKKPLYTSARLKKGEVLYLETHSCRYELCFAGEKMVRASQAAQQHEDTDKSSS QIRPPHSSNGDNSDTSNVLIDAFRWSRCKRPLPQKLMRSVGIPLPLEHVEVVAENLDWEDVQWSQTGVLIAEKDYTLARVHFLSPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08450			unknown protein		Lus10004299 [exp]	0	1
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	3.2	0.8520
AT5G19430			RING/U-box superfamily protein...		Lus10036034 [exp]	8.9	0.8100
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	10.5	0.8156
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10041743 [exp]	12.0	0.8375
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10026287 [exp]	15.7	0.8566
AT1G16560			Per1-like family protein (.1.2...		Lus10031187 [exp]	16.9	0.7871
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Lus10024082 [exp]	22.9	0.8119
AT5G16780		MDF, DOT2	MERISTEM-DEFECTIVE, DEFECTIVEL...		Lus10023155 [exp]	23.2	0.7694
AT1G16810			unknown protein		Lus10033383 [exp]	23.4	0.7996
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	23.9	0.7972

Compare expression of checked genes

Lus10004299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.