Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07470 157 / 1e-49 Protein of unknown function, DUF538 (.1) AT3G07460 143 / 5e-44 Protein of unknown function, DUF538 (.1.2) AT5G16380 126 / 4e-37 Protein of unknown function, DUF538 (.1) AT1G61667 98 / 1e-26 Protein of unknown function, DUF538 (.1) AT5G54530 96 / 1e-25 Protein of unknown function, DUF538 (.1) AT5G19860 87 / 8e-22 Protein of unknown function, DUF538 (.1) AT1G55265 71 / 6e-16 Protein of unknown function, DUF538 (.1) AT4G02360 63 / 4e-13 Protein of unknown function, DUF538 (.1) AT1G02816 62 / 2e-12 Protein of unknown function, DUF538 (.1) AT4G02370 61 / 2e-12 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019216 [exp] 232 / 1e-78 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10029538 [exp] 185 / 2e-60 AT3G07470 192 / 5e-63 Protein of unknown function, DUF538 (.1) Lus10039620 [exp] 186 / 3e-60 AT3G07470 181 / 4e-58 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 164 / 3e-51 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 157 / 3e-49 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10020218 [exp] 137 / 1e-41 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 134 / 4e-40 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10007617 [exp] 99 / 1e-26 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Lus10018396 [exp] 94 / 5e-25 AT1G61667 176 / 5e-57 Protein of unknown function, DUF538 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238900 [exp] 164 / 3e-52 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 163 / 5e-52 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.001G410300 [exp] 103 / 2e-28 AT5G54530 179 / 2e-58 Protein of unknown function, DUF538 (.1) Potri.011G129900 [exp] 99 / 5e-27 AT5G54530 181 / 6e-59 Protein of unknown function, DUF538 (.1) Potri.011G032600 [exp] 89 / 5e-23 AT1G61667 177 / 1e-57 Protein of unknown function, DUF538 (.1) Potri.004G029600 [exp] 87 / 2e-22 AT1G61667 175 / 8e-57 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 83 / 1e-20 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008400 [exp] 81 / 2e-19 AT5G19860 205 / 5e-68 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 74 / 2e-17 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.001G008320 [exp] 72 / 3e-16 AT1G55265 135 / 4e-41 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [flax] [poplar] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Lus10004300 pacid=23163610 polypeptide=Lus10004300 locus=Lus10004300.g ID=Lus10004300.BGIv1.0 annot-version=v1.0 ATGGGCCTCCTCCCGAAAGGAATCACCGACTTCAAATTCGACTCCTCTGCCGGCTACTTCGAAGCCTATCTCGACCAAGCTTGCAATGCGAAATACGGGA GCCAGATTCATTACGACCGAAACGTTTCGGGAACGCTGAGCTTCGGCAAGATCGACAGCTTGTCAGGGATTTCAGCTCAGGAACTTTTCCTCTGGTTCCC TGTTAAGGAAATTCGCGTTGATGTACCTAGCTCGGGGCTCATTTACTTCGACGTCGGCGTTGTTCTTAAGCAGTTCTCGCTTTCGTTGTTTGAGACTCCA AAAGATTGCTCTGTTTCCGGTGGCCAGAGGATTGCCATCGGCGGTTTGTTCAAGTTTGATGGTAGTGGAACTGGAGCGATGAAGGGCCCTGTAAACTTGG AAGGCACAGTTCATGGAGCTTGGAGAACACTGGTTCCATGTGAAGGCAAAGATCAAAGAAGATGA
AA sequence Show only first row Show all	>Lus10004300 pacid=23163610 polypeptide=Lus10004300 locus=Lus10004300.g ID=Lus10004300.BGIv1.0 annot-version=v1.0 MGLLPKGITDFKFDSSAGYFEAYLDQACNAKYGSQIHYDRNVSGTLSFGKIDSLSGISAQELFLWFPVKEIRVDVPSSGLIYFDVGVVLKQFSLSLFETP KDCSVSGGQRIAIGGLFKFDGSGTGAMKGPVNLEGTVHGAWRTLVPCEGKDQRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07470			Protein of unknown function, D...		Lus10004300 [exp]	0	1
AT1G10550		XTH33, XET	xyloglucan:xyloglucosyl transf...		Lus10013000 [exp]	2.4	0.7792
AT5G54380		THE1	THESEUS1, protein kinase famil...		Lus10038595 [exp]	9.2	0.7042
AT3G07960		PIP5K6	phosphatidylinositol-4-phospha...		Lus10024151 [exp]	17.5	0.7399
AT3G07470			Protein of unknown function, D...		Lus10019216 [exp]	21.2	0.7193
AT3G07470			Protein of unknown function, D...		Lus10039620 [exp]	22.0	0.7105
					Lus10010828 [exp]	25.2	0.7230
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10029947 [exp]	25.4	0.7193
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10004370 [exp]	34.1	0.6553
AT1G11755		LEW1	LEAF WILTING 1, Undecaprenyl p...		Lus10042338 [exp]	35.6	0.7000
AT1G57680			unknown protein		Lus10008924 [exp]	41.5	0.6465

Compare expression of checked genes

Lus10004300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.