Plant FIBer expression Database

Lus10004301 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G23570 59 / 7e-11 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.T045700
[exp]
99 / 7e-25 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
Potri.018G137400
[exp]
97 / 3e-24 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info
Representative CDS sequence
>Lus10004301 pacid=23163603 polypeptide=Lus10004301 locus=Lus10004301.g ID=Lus10004301.BGIv1.0 annot-version=v1.0
ATGAGTTCAAGGGGAAAAACACCATCAAACAAGGGGAAGGCCACAGAAGGCAGTAGCCACTTTGATTTGAATAAAGGAGTGGCAGATATCAAGCTGAATT
CTGCACAGACCGATGGGGACTGGGAGGTCTATGCCAAGAAGCCCAACAAGAACAAAGGAGGCAGCAATGTCTCAAAGGGTTGGGGTTCACAAAACTCTAA
TTCAAAAGCCTGGGGGCCGGCAGATGCGGGGCAGCAAAATAGAAGGACGACTGGCAATGCTTGGGGAAATCAAGCAGTTGAATCTTCAAGGCAACCTGGC
AGAGGAAATCGGAACTTGGGTAACTATATGGCGCCTCCACAAGGGGGAATCCCCCCTCCTCTGGCGAACGGGTGGAACTGGCAATCCAGGGCTGGGGCAG
CGAAAGTGCCTGAAGGTGGCTGCTCCTGA
AA sequence
>Lus10004301 pacid=23163603 polypeptide=Lus10004301 locus=Lus10004301.g ID=Lus10004301.BGIv1.0 annot-version=v1.0
MSSRGKTPSNKGKATEGSSHFDLNKGVADIKLNSAQTDGDWEVYAKKPNKNKGGSNVSKGWGSQNSNSKAWGPADAGQQNRRTTGNAWGNQAVESSRQPG
RGNRNLGNYMAPPQGGIPPPLANGWNWQSRAGAAKVPEGGCS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G23570 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3... Lus10004301
[exp]
0 1
AT5G23570 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3... Lus10004302
[exp]
1.4 0.9125
AT1G21880 LYM1 lysm domain GPI-anchored prote... Lus10018191
[exp]
3.2 0.9226
AT1G78560 Sodium Bile acid symporter fam... Lus10013700
[exp]
4.2 0.9102
AT4G21610 LOL2 lsd one like 2 (.1) Lus10007343
[exp]
6.9 0.8749
AT5G40490 RNA-binding (RRM/RBD/RNP motif... Lus10032124
[exp]
7.1 0.8655
AT4G35050 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY ... Lus10005074
[exp]
8.9 0.9065
AT5G01090 Concanavalin A-like lectin fam... Lus10021117
[exp]
9.5 0.8719
AT2G42520 P-loop containing nucleoside t... Lus10000848
[exp]
10.6 0.8601
AT2G32840 proline-rich family protein (.... Lus10003918
[exp]
11.0 0.8801
AT3G10070 TAF12, TAFII58 TATA-ASSOCIATED FACTOR II 58, ... Lus10003250
[exp]
12.4 0.8834

Lus10004301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.