Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23570 485 / 2e-167 SGS3, ATSGS3 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) AT3G22430 61 / 8e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019214 [exp] 814 / 0 AT5G23570 515 / 2e-179 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10011024 [exp] 451 / 2e-147 AT5G41150 1233 / 0.0 ULTRAVIOLET HYPERSENSITIVE 1, Restriction endonuclease, type II-like superfamily protein (.1.2) Lus10026697 [exp] 197 / 4e-61 AT5G23570 110 / 2e-28 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Lus10041203 [exp] 72 / 1e-14 AT3G22430 186 / 2e-57 unknown protein Lus10021917 [exp] 47 / 4e-06 AT3G22430 125 / 2e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G137400 [exp] 572 / 0 AT5G23570 603 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.T045700 [exp] 572 / 0 AT5G23570 604 / 0.0 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G021000 [exp] 428 / 2e-145 AT5G23570 439 / 3e-147 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.001G037101 [exp] 333 / 6e-108 AT5G23570 334 / 4e-106 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188350 [exp] 273 / 9e-82 AT5G23570 269 / 7e-78 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187900 [exp] 254 / 1e-77 AT5G23570 228 / 7e-66 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188100 [exp] 243 / 3e-73 AT5G23570 225 / 1e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G187800 [exp] 235 / 3e-72 AT5G23570 226 / 4e-67 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188000 [exp] 218 / 6e-65 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1) Potri.003G188200 [exp] 217 / 8e-65 AT5G23570 220 / 3e-64 SUPPRESSOR OF GENE SILENCING 3, XS domain-containing protein / XS zinc finger domain-containing protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10004302 pacid=23163604 polypeptide=Lus10004302 locus=Lus10004302.g ID=Lus10004302.BGIv1.0 annot-version=v1.0 ATGAGCGAAGAGTTTGATTCTGATGACAGTCAGAAGAGCCATGACACCCGTAAGAAGAACAGGTGGTTTAAGAAGTTTTTTGATTTGCTGGACAGCCTTA CTCTTGACCAAATCAATGAACAGGATAGACAGTGGCACTGTGCCGCATGCCAAAATGGTCCGGGTGCTATTGACTGGTTCAAAGGGCTGCAGCCGTTGAT CACACATGCCAGGACAAAAGGAGCGGAACGAGTAAAGCTACACAGGGAGCTCGCTGAACTTCTGGAGGAGGAAATGTCCAGGAGGGGAACTTCTGCTTTC CCGTCTGGGGAAGTTTATGCCCAATGGAGTGGGTTGACGGAGGAGGAGAATGATTACGATGTAGTTTGGCCTCCTATGGTCATAGTGATGAATACACGGC TCGACAAGGATGACAACGATAAGTGGACTGGCATGGGCAACCAAGAGCTGCTTGAATATTTCCGAGCCTATGATGCTGTTAAGGCTAAACATTCGTATGG TCCACAAGGCCACCGTGGCATGATTCTTCTGATATTCGAGGCCTCGTCAAGGGGGTTTTTCGAAGCCACACGATTGAGTACTCACTTCACCAACCAGGGA ACCGATAGGAATGCTTGGAATCAGAAGCGGAACTGGTATTATCCTGGCGGGAAGAGGCAGCTCTATGGTTTCATAGCCACCAAAGAAGATGTCGATCTTT TCAATCAGCATTCTCACGGCAAGGCGAAGCTGAGATTCGAGATGCGATCATACAATGAGGTGGTTGTTCGAGACTACAACAGAGTGTGCAATGATAATGT GCAGCTGAGCTATTTCAAGACTAAGGTCAAAAAAGAACAGAGGAATTCCAGGGCTCTTGCCGAATCGCTGGGCACTGTTAGCGAGAAGCTGAGGAAGACG ATGGAGGAGAACCGTATTGTTAGACAGAGGACCCAAATGTATCATGAGGAGAACAAAGAAGAGCTTGATTTCCAAGAGAAGTTCTTCAAAGACCAACTGG AGCATATCCTTGAAAAAAGGAAGGCTCAGGAAGAGGAATTCGAGAATCGACAGCAGGAGGAGCGGAAGAAGGTTACGGGCCAGAGCTCTTATGGGTCTAA CAGTGGGGATTACAGAACCAGGGTGGACGAGGTGTCAAGGTTCATACAGCTGCAGGACAAGGAAATGGAGCAGTTTGTGGAGGAGAGGGAGCAGATGGTG AAGCTGCACGAGGAGAAGTACGTTGTGATGAGGCGCAAACACTGGCAGGACGAGGTGGATCTCGAGCAGGAGTTCGATACGCAGCTGACCAATCTGATGA AGAAGTACACCCCGCAGAGCTCGGATAGTGGTGGGAATGCTGCTGCGAAAGCTTGA
AA sequence Show only first row Show all	>Lus10004302 pacid=23163604 polypeptide=Lus10004302 locus=Lus10004302.g ID=Lus10004302.BGIv1.0 annot-version=v1.0 MSEEFDSDDSQKSHDTRKKNRWFKKFFDLLDSLTLDQINEQDRQWHCAACQNGPGAIDWFKGLQPLITHARTKGAERVKLHRELAELLEEEMSRRGTSAF PSGEVYAQWSGLTEEENDYDVVWPPMVIVMNTRLDKDDNDKWTGMGNQELLEYFRAYDAVKAKHSYGPQGHRGMILLIFEASSRGFFEATRLSTHFTNQG TDRNAWNQKRNWYYPGGKRQLYGFIATKEDVDLFNQHSHGKAKLRFEMRSYNEVVVRDYNRVCNDNVQLSYFKTKVKKEQRNSRALAESLGTVSEKLRKT MEENRIVRQRTQMYHEENKEELDFQEKFFKDQLEHILEKRKAQEEEFENRQQEERKKVTGQSSYGSNSGDYRTRVDEVSRFIQLQDKEMEQFVEEREQMV KLHEEKYVVMRRKHWQDEVDLEQEFDTQLTNLMKKYTPQSSDSGGNAAAKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004302 [exp]	0	1
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Lus10004301 [exp]	1.4	0.9125
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	3.7	0.9005
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	4.2	0.8771
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10002172 [exp]	6.3	0.8802
AT2G33845			Nucleic acid-binding, OB-fold-...		Lus10039889 [exp]	8.2	0.8386
AT1G60590			Pectin lyase-like superfamily ...		Lus10030604 [exp]	9.2	0.8360
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	9.8	0.8941
AT3G03920			H/ACA ribonucleoprotein comple...		Lus10020289 [exp]	12.0	0.8660
AT5G49665			Zinc finger (C3HC4-type RING f...		Lus10028225 [exp]	12.4	0.8756
AT4G38790			ER lumen protein retaining rec...		Lus10026285 [exp]	13.9	0.7789

Compare expression of checked genes

Lus10004302 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.