Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13600 128 / 5e-34 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 119 / 6e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 119 / 1e-30 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G21090 115 / 9e-30 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G20540 114 / 2e-29 MEF21 mitochondrial editing factor 21 (.1) AT3G22690 113 / 1e-28 unknown protein AT4G37380 110 / 9e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37170 108 / 3e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 108 / 4e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08305 108 / 4e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003383 [exp] 371 / 2e-132 AT2G21090 145 / 1e-40 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10019213 [exp] 353 / 2e-120 AT2G21090 376 / 2e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10011025 [exp] 195 / 3e-64 AT2G13600 77 / 1e-17 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004114 [exp] 153 / 1e-47 AT3G13880 96 / 5e-24 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014009 [exp] 147 / 6e-45 AT3G13880 89 / 2e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030125 [exp] 139 / 2e-38 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10017386 [exp] 124 / 8e-34 AT5G08305 357 / 9e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010183 [exp] 125 / 2e-33 AT5G08305 529 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 116 / 6e-30 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G091600 [exp] 125 / 5e-33 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G035900 [exp] 122 / 3e-32 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.002G175900 [exp] 118 / 8e-31 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G073100 [exp] 114 / 2e-29 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 114 / 3e-29 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G245300 [exp] 114 / 5e-29 AT3G22690 570 / 0.0 unknown protein Potri.003G031600 [exp] 114 / 7e-29 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G088600 [exp] 113 / 1e-28 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G035900 [exp] 113 / 1e-28 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 112 / 1e-28 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10004303 pacid=23163620 polypeptide=Lus10004303 locus=Lus10004303.g ID=Lus10004303.BGIv1.0 annot-version=v1.0 ATGGTTTCAATGGATCCTGCCTCGGTAATCGACGAATATGGAAGTTTACTATCGACATGCATCACATCCAGGAACCTCAAATTGGGCAAGGCAATTCATT CCAACTTCATCAAAACCGCGATCAACTTCAACTCCTTCGTCGTTAATCGTCTAATCGACATGTACTCCAAATGCAGTTCTATCGGATCCGCCCATAAGGC CTTCGACGATCTCCCCTTCAAGAACGCTCGTTCCTGGAACACCATCGTCTCCGCCTGCTCCAAATTGGGTATGGTGAAAATGGCGCGGAAACTGTTCGAT GAAATGCCTGACCGAAATCTCGTCAGCTACAACTCAATGATTTCGGGGCTTTCTCGTGGTGGGTATTACAAGGAGGCGTTGGGTATGTTCATGAGATTGC AGGAAGATTGCGTTGGGGGGTTTTGTTTGGATGACTTTACTGTTGTGAGTGTGGTGAGTTGTTGTGCGAGCTTTCGTGGGTTGGAATTGGTTCGTCAGCT GCATGGTGTGGGATTAGTTGTTGGGTTGGAAGGGAATGTGGTGTTGCTGAACTCTGTGGTTGATGCTTATGGGAAATGTGGGGAACCTGATGTTAGTTTC CGTGTATTTAGCAGGATGAATGACAGGGATGTTGTGTCGTGGACGTCAATGTTGTGTCGTGGACGTTAA
AA sequence Show only first row Show all	>Lus10004303 pacid=23163620 polypeptide=Lus10004303 locus=Lus10004303.g ID=Lus10004303.BGIv1.0 annot-version=v1.0 MVSMDPASVIDEYGSLLSTCITSRNLKLGKAIHSNFIKTAINFNSFVVNRLIDMYSKCSSIGSAHKAFDDLPFKNARSWNTIVSACSKLGMVKMARKLFD EMPDRNLVSYNSMISGLSRGGYYKEALGMFMRLQEDCVGGFCLDDFTVVSVVSCCASFRGLELVRQLHGVGLVVGLEGNVVLLNSVVDAYGKCGEPDVSF RVFSRMNDRDVVSWTSMLCRGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10004303 [exp]	0	1
AT5G01110			Tetratricopeptide repeat (TPR)...		Lus10022401 [exp]	1.4	0.8926
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10018978 [exp]	4.9	0.8845
AT1G27590			unknown protein		Lus10007229 [exp]	6.9	0.8987
AT1G28690			Tetratricopeptide repeat (TPR)...		Lus10015308 [exp]	7.5	0.8611
AT4G16835			Tetratricopeptide repeat (TPR)...		Lus10003382 [exp]	10.3	0.8402
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10037481 [exp]	11.1	0.8768
AT1G06710			Tetratricopeptide repeat (TPR)...		Lus10025532 [exp]	12.5	0.8658
AT3G04160			unknown protein		Lus10021982 [exp]	13.7	0.8599
AT1G20230			Pentatricopeptide repeat (PPR)...		Lus10006815 [exp]	14.3	0.8258
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10032922 [exp]	21.0	0.8599

Compare expression of checked genes

Lus10004303 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.