Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11290 123 / 2e-32 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G24000 122 / 3e-32 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20230 120 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 118 / 4e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16470 117 / 7e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 118 / 8e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G16835 115 / 8e-30 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 115 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 114 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 114 / 2e-29 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003382 [exp] 315 / 3e-110 AT4G16835 212 / 2e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019213 [exp] 305 / 1e-101 AT2G21090 376 / 2e-123 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10006815 [exp] 288 / 3e-101 AT1G20230 116 / 6e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010850 [exp] 120 / 3e-31 AT5G60020 856 / 0.0 laccase 17 (.1) Lus10013991 [exp] 119 / 3e-31 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 119 / 4e-31 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024381 [exp] 119 / 6e-31 AT3G23330 777 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 119 / 7e-31 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020743 [exp] 117 / 1e-30 AT1G04840 771 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220300 [exp] 132 / 1e-35 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G119000 [exp] 128 / 3e-34 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G077700 [exp] 125 / 1e-33 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 123 / 2e-32 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G001200 [exp] 122 / 2e-32 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 122 / 2e-32 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 121 / 6e-32 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G010100 [exp] 119 / 9e-32 AT4G16470 551 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G125500 [exp] 120 / 2e-31 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 120 / 2e-31 AT3G22690 582 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004304 pacid=23163627 polypeptide=Lus10004304 locus=Lus10004304.g ID=Lus10004304.BGIv1.0 annot-version=v1.0 ATGGCTCTGTTCGATTTCAAGTCTAACAACCACTTTGTTGCATCCTCAGACGGAGCCAACCTCCAAATCTACGAGTTAATCAACCTCACCGTTAACATTC CTTCCATAAAAAAGATTCACTGGGTCTTGGTTGATTTATTAGGTAGGAAAAACAGACTGAGCGAAGCGATGGAGTTAGTCGAAAAAACTCCTGGTCTATC GGAGCATGCGGGGATATGGGGCGCTCTATTAGGTGCTTGTCGGATCCATCACAATGTGGGTCTTGCCATGAAGGCTGCGGAAACTCTATTCAAATTAGAA CCCGGGAATCCTGGAAGATGTGTCATGTTAGCGAATGTTTATACATCAGCTAATAAATGGAGTGATGCTTCAAGAATGAGAAGGGAAGTGGATGAAAAAG GTCTAGTTAAAGATGTAGCTTACAGTAGGATTGAGGTGAGGAATGAGAGGCATGAGTTTGTGGCCAAGGACAAGGCTCACAGACAGATACAAGAAGTATA TGAAGCAATCCCTCGACTACTTGATCATATGAGGGAAGCTGGACACTGGCCTTCCACAAATGACTTTGGATCGTCGGAGAAGATGATGTCCTAG
AA sequence Show only first row Show all	>Lus10004304 pacid=23163627 polypeptide=Lus10004304 locus=Lus10004304.g ID=Lus10004304.BGIv1.0 annot-version=v1.0 MALFDFKSNNHFVASSDGANLQIYELINLTVNIPSIKKIHWVLVDLLGRKNRLSEAMELVEKTPGLSEHAGIWGALLGACRIHHNVGLAMKAAETLFKLE PGNPGRCVMLANVYTSANKWSDASRMRREVDEKGLVKDVAYSRIEVRNERHEFVAKDKAHRQIQEVYEAIPRLLDHMREAGHWPSTNDFGSSEKMMS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10004304 [exp]	0	1
AT2G21090			Pentatricopeptide repeat (PPR-...		Lus10019213 [exp]	1.0	0.8810
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Lus10008755 [exp]	2.8	0.8220
					Lus10000458 [exp]	6.9	0.7667
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10000912 [exp]	7.6	0.8372
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	9.2	0.8173
AT5G04050			RNA-directed DNA polymerase (r...		Lus10036278 [exp]	10.6	0.7990
AT1G74600		OTP87	organelle transcript processin...		Lus10002054 [exp]	11.7	0.8284
					Lus10042563 [exp]	12.0	0.7996
AT3G27730		MER3, RCK	ROCK-N-ROLLERS, ATP binding;AT...		Lus10032137 [exp]	15.0	0.7635
AT5G23200			unknown protein		Lus10010192 [exp]	15.6	0.7862

Compare expression of checked genes

Lus10004304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.