Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019212 [exp] 354 / 1e-113 ND / Lus10019691 [exp] 281 / 4e-86 ND / Lus10004308 [exp] 226 / 1e-67 ND / Lus10016424 [exp] 225 / 3e-65 ND / Lus10042237 [exp] 213 / 6e-59 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10019690 [exp] 203 / 3e-57 ND / Lus10019211 [exp] 198 / 6e-57 ND / Lus10026417 [exp] 199 / 6e-56 ND / Lus10000475 [exp] 197 / 2e-54 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004305 pacid=23163597 polypeptide=Lus10004305 locus=Lus10004305.g ID=Lus10004305.BGIv1.0 annot-version=v1.0 ATGGCTCCATTTGAGTTCAAATTGGAAAACCATTTTGTTGGTTCCTCTGATGGAACTTCCCTCCAAGTCTATGAGCTTACAAAGTCTTCTGCTCACTTCT CTTCCATCCAGAAGGCTGATTGGAAGAAAGTTGCCACCATTCCTAAACAAGATGATTTTGATGATGATGCATCATATGATGGGCTTCTGTTCTTCAACGA AAGAATCGAGGAACCAGAAGTGCTGACTATGCTTGCTGAGCACCTGAAGGAGTTACGCTTGCTGGCGAGTCCAGAAGGGTATTGTTTCCAACGAGTATCC GACTTTGGTATTCACTATCTTCGACTGAACGATCTGTTCAGCTGGCCTCGCTACGGGGTCAAACTTGTGACGGTCAACACTTGGAGCAGGTTGGAGCTCA ATTTGTTGAAGGACGACCACGACCACGGCCATGATGATTTGGAGGAGGAGGAGGCAAATAGGTCCGAGGTCGACAAGGAAGAATTACAAAGGCCAACCAA GTGGACGAATATCAATGTCATAGTTCGGGAGCTGCAGAGACAACTGAGGAGGAAGGATGTTGAGTTGCGGATGCTTAGAAGGAAGAAGATTGAGGAGGAC AGAGCGAACGAAGAAACGATACAAGAACTAGAAAAGCTTAACGAGGATCTAGAGGAGGCAAATGGAACCAAGGATGAGGAATTGCAAAAGTTGCACAAAC AATTGAAAAGGAAAGATGACCAACTAGAGATGCTGAAGAAGAAGAAAGACGTGGAGGAAGAGGCTAGTGAGAAAAGAATCGCAGAGCTAGAGAAGCAGAA CGAGGATTCGGAAGAAGCAAGAAGAGCAAAGGATAAGGAATTACAAAAGCTACATAAGCAGTTGAAGAAGAAGGACGGCGAACTACAGGCGCTCAAGAAG AAGGCAGAGGAGAAATCAAATAGGATAGAAGAACTAGAGGAGATGTTCGAGGATTTGGAGGACGAGTTTTCGAAGCTAAAGAAAGTGGAAAGTGAGTTGC GGAAACTGTTGAAACTGAAGGAGGATGAATTACAAGCATTGAGAAAGAAGAAACAAGACGACGTAGAAGGAAAACAGTCAAAGTTAAGAGAAGAATTGGA GGCCAGAAAGAATGAAGAACTCGAAAAGCTGAAGAAGGAGAAGGATGATGAGATCTCGAAGATACTACGAGAGAAGAATGATGAAGCAGCAAAAACAAGA AAGGTGGAGGGGGAGTTGAAAGAAGCAAGGGAGAAACTAAGTTCGAGTGTAGCTGAGGTGGCAGCGGTAAAGAAAGAATTGGAGGAGGAAAATAAGCGTA TAAAGGAGGCGGAGGACGAAGTTTCGAAGCTAAAGAAGTCAAAAAGTGAGTTGCGGAAACTGTTGAAACTGAAGGAGAATGAATTGCAAGGATTGAGAGA GAAGAAACAAGACGACGTAGAAGCCAAATTGTCGAAGTTAAGAGAAGAATTGGAGGCCAGAAAAAATGAAGAACTCGAAAAGCTGAAGAAGGAGAAGGAT GAGGAGTTGAAAGAAGCAAGGGAGAAACTAAGTTCCAGTGTAGCTGGATTGGAGAAATGTCAAAGGAATTCGTGGGTGATTCTACCTTCCACCAAGTTCA TAAAACGGTTCGGCTCAGATGGTACGTATCTGGCCACGAGACAGAGGGTCCCGCCTGAAATATTCTCATGCAGCCGTGCCTCAAACATATTCATGAGTAA CTCACATAAGTTGGTGAATAGAATGTCAGTTTACGATGATTACATTGTTAGGTTGGTTGACGAGGAAAGAAGTGAGCAATGGCCACCTCTACCAAAAATC AGTGTAAGTATCGGAAGGGACGGTTCAGAATTCGATAAGGACAACTGGTGGTATTTAAAAACGACCCATCCTGAAGGTGGATTGACGATGCTGGTATATT ACGAAGGAAATCGTTCTCAGATTACCGTATCTACTTCCGACGGCAACCGCGGGGCAATCTTCCCTTTGCCGTTTCCATCGGCGGATCTTGAGATTTATTC GCGGAGTCACAAGTTCTCCATCTTTTGGCTAGAACCAGTTGGAGTGAGATTCGGTTTTGCCTACAGGCCGACATAG
AA sequence Show only first row Show all	>Lus10004305 pacid=23163597 polypeptide=Lus10004305 locus=Lus10004305.g ID=Lus10004305.BGIv1.0 annot-version=v1.0 MAPFEFKLENHFVGSSDGTSLQVYELTKSSAHFSSIQKADWKKVATIPKQDDFDDDASYDGLLFFNERIEEPEVLTMLAEHLKELRLLASPEGYCFQRVS DFGIHYLRLNDLFSWPRYGVKLVTVNTWSRLELNLLKDDHDHGHDDLEEEEANRSEVDKEELQRPTKWTNINVIVRELQRQLRRKDVELRMLRRKKIEED RANEETIQELEKLNEDLEEANGTKDEELQKLHKQLKRKDDQLEMLKKKKDVEEEASEKRIAELEKQNEDSEEARRAKDKELQKLHKQLKKKDGELQALKK KAEEKSNRIEELEEMFEDLEDEFSKLKKVESELRKLLKLKEDELQALRKKKQDDVEGKQSKLREELEARKNEELEKLKKEKDDEISKILREKNDEAAKTR KVEGELKEAREKLSSSVAEVAAVKKELEEENKRIKEAEDEVSKLKKSKSELRKLLKLKENELQGLREKKQDDVEAKLSKLREELEARKNEELEKLKKEKD EELKEAREKLSSSVAGLEKCQRNSWVILPSTKFIKRFGSDGTYLATRQRVPPEIFSCSRASNIFMSNSHKLVNRMSVYDDYIVRLVDEERSEQWPPLPKI SVSIGRDGSEFDKDNWWYLKTTHPEGGLTMLVYYEGNRSQITVSTSDGNRGAIFPLPFPSADLEIYSRSHKFSIFWLEPVGVRFGFAYRPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004305 [exp]	0	1
AT5G20550			2-oxoglutarate (2OG) and Fe(II...		Lus10016145 [exp]	7.5	0.7441
AT4G30320			CAP (Cysteine-rich secretory p...		Lus10015522 [exp]	9.7	0.7161
AT4G15050			Protein of Unknown Function (D...		Lus10002231 [exp]	14.3	0.6836
AT4G23350			Protein of Unknown Function (D...		Lus10042273 [exp]	31.9	0.6644
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10000022 [exp]	46.0	0.6420
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	47.5	0.6569
AT4G24900			unknown protein		Lus10024906 [exp]	63.0	0.5872
AT2G18980			Peroxidase superfamily protein...		Lus10001622 [exp]	71.9	0.5970
AT3G14690		CYP72A15	"cytochrome P450, family 72, s...		Lus10026177 [exp]	75.6	0.6370
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031157 [exp]	84.9	0.6409

Compare expression of checked genes

Lus10004305 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.