Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019211 [exp] 431 / 1e-150 ND / Lus10004308 [exp] 285 / 5e-94 ND / Lus10016424 [exp] 233 / 2e-71 ND / Lus10042237 [exp] 210 / 3e-61 AT4G27595 44 / 5e-04 Plant protein of unknown function (DUF827) (.1) Lus10019691 [exp] 205 / 5e-61 ND / Lus10000479 [exp] 206 / 3e-60 ND / Lus10000475 [exp] 200 / 2e-58 ND / Lus10000478 [exp] 193 / 1e-55 ND 41 / 0.004 Lus10026416 [exp] 176 / 1e-51 AT5G52410 42 / 0.001 unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004306 pacid=23163586 polypeptide=Lus10004306 locus=Lus10004306.g ID=Lus10004306.BGIv1.0 annot-version=v1.0 ATGGCTCTGTTTGATTTCAAGTCTAACAACCACTTTGTTGCATCCTCGGACGGAGCCAACCTCCTAATCTACGAGTTAACCAACCCCACCGTTCACCTTC CTTCGATAAAAAAGACTCACTGGAAGAAAGTTGCCACCATCCAAACAAGCCACGGAGAAGATGATATGTCATATAACGGGCTTATGTTCTTCGATGGCCA TGGAAGAATCGAGGAAGAAGAGGAGTTGACAATGCTTGCTCAACACCTCAAGGACTTGCACTTGCTAGTGAGTCCCGAAGGGTATTGCTTCCAGGAAGTA TCTGATCTTGGAGTGTACTCTGATTATGGGATTGACTATCTCCGGCTGAACGATCTGTTCAGCTGGCCTCGTTACGGGGTCGAACTTGCGACGACCAATG TGTGGAGCCGATCGGAGTTGAAGTACCACCTTCCTAGGCACAAGCAGCATTCAAAGCCGGCGGTACATGGTGGGTTGATCAGTAAGGAAAAGTACGAGGA GTTGAAAAGGTCGGTCAAAGAGAAAAATGACGAACTAGAGAAGCTCAAAGAAAAACTGAAGGAATGTGAAAACAAGTCATGGGCGATTCTGCCTTCCACC AAGTTCATACCGTGGAGCTTGGATCCCAAAGACAAGCACCTTACGAGAAGACAACCGTGTCCACAGGAAAAGTTCGATCTCTCCTCTCAGCCGTTTGGTC ATCCTTGGAATGCGAACTTGCCTGAATTCGAAGACAACGCGTATTTTTCAAGCAACAACGGTATCCGGTTGGTCGACGACGACGAGATGAATACCAGTAC CTGGCCGTCGCCACCAACTTTCCACATACTTGTTGTTCGGGATAATACAGCTGTCCGAGATTTAGACAAAAACGACTGGTGGTATGTGAAAACGACGAAC CCTGAAGGTGGCTTGACAATGCTAGTCTACTACGATGGGAATCGCTCTCGGATTAGTGTCGGTAGTTTCGGCGATCATGTTATCGTTCCTTTCCCGTGTT CCAAGGGTGTTAAGCTTATGACGTATACTTACCGTTTGTGTCTCTTTGATATGTTCCCGTATGGCATGAGATTCGGTTTTATGTACCGGCCACTGTGTTA G
AA sequence Show only first row Show all	>Lus10004306 pacid=23163586 polypeptide=Lus10004306 locus=Lus10004306.g ID=Lus10004306.BGIv1.0 annot-version=v1.0 MALFDFKSNNHFVASSDGANLLIYELTNPTVHLPSIKKTHWKKVATIQTSHGEDDMSYNGLMFFDGHGRIEEEEELTMLAQHLKDLHLLVSPEGYCFQEV SDLGVYSDYGIDYLRLNDLFSWPRYGVELATTNVWSRSELKYHLPRHKQHSKPAVHGGLISKEKYEELKRSVKEKNDELEKLKEKLKECENKSWAILPST KFIPWSLDPKDKHLTRRQPCPQEKFDLSSQPFGHPWNANLPEFEDNAYFSSNNGIRLVDDDEMNTSTWPSPPTFHILVVRDNTAVRDLDKNDWWYVKTTN PEGGLTMLVYYDGNRSRISVGSFGDHVIVPFPCSKGVKLMTYTYRLCLFDMFPYGMRFGFMYRPLC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004306 [exp]	0	1
AT5G46230			Protein of unknown function, D...		Lus10033612 [exp]	9.5	0.7043
AT4G15733		SCRL11	SCR-like 11 (.1)		Lus10042791 [exp]	12.5	0.6720
AT4G15050			Protein of Unknown Function (D...		Lus10002231 [exp]	14.3	0.6568
					Lus10043052 [exp]	23.1	0.6358
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	23.2	0.6166
					Lus10019586 [exp]	31.9	0.5977
AT2G28720			Histone superfamily protein (....		Lus10025313 [exp]	32.4	0.6320
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10015066 [exp]	32.8	0.6347
AT1G10010		AAP8, ATAAP8	amino acid permease 8 (.1)		Lus10037248 [exp]	35.3	0.6238
AT3G05610			Plant invertase/pectin methyle...		Lus10015211 [exp]	41.6	0.6168

Compare expression of checked genes

Lus10004306 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.