Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11080 82 / 3e-19 AtRLP35 receptor like protein 35 (.1) AT2G15042 79 / 4e-18 Leucine-rich repeat (LRR) family protein (.1) AT3G11010 79 / 5e-18 AtRLP34 receptor like protein 34 (.1) AT5G27060 79 / 6e-18 AtRLP53 receptor like protein 53 (.1) AT3G28890 73 / 9e-16 AtRLP43 receptor like protein 43 (.1.2) AT5G25910 72 / 1e-15 AtRLP52 receptor like protein 52 (.1) AT3G05660 71 / 3e-15 AtRLP33 receptor like protein 33 (.1) AT4G13880 69 / 1e-14 AtRLP48 receptor like protein 48 (.1) AT3G05650 69 / 3e-14 AtRLP32 receptor like protein 32 (.1) AT2G15080 65 / 4e-13 AtRLP19 receptor like protein 19 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004310 [exp] 187 / 3e-56 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10004309 [exp] 170 / 9e-53 AT1G47890 225 / 6e-66 receptor like protein 7 (.1) Lus10004313 [exp] 176 / 2e-52 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10026415 [exp] 135 / 9e-38 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 134 / 4e-37 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10042239 [exp] 132 / 1e-36 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10003389 [exp] 120 / 3e-32 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002214 [exp] 119 / 4e-32 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10003387 [exp] 118 / 1e-31 AT1G47890 394 / 3e-120 receptor like protein 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120600 [exp] 129 / 1e-35 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.016G120532 [exp] 126 / 2e-34 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.001G128400 [exp] 81 / 2e-18 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.012G025400 [exp] 77 / 4e-17 AT1G45616 399 / 7e-122 receptor like protein 6 (.1) Potri.011G055200 [exp] 74 / 4e-16 AT3G25020 312 / 6e-92 receptor like protein 42 (.1) Potri.001G389100 [exp] 72 / 1e-15 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.012G028500 [exp] 69 / 1e-14 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.012G008911 [exp] 69 / 2e-14 AT3G05650 303 / 5e-89 receptor like protein 32 (.1) Potri.012G016715 [exp] 69 / 2e-14 AT2G33060 247 / 1e-74 receptor like protein 27 (.1) Potri.011G141100 [exp] 69 / 2e-14 AT2G33020 295 / 2e-89 receptor like protein 24 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004307 pacid=23163589 polypeptide=Lus10004307 locus=Lus10004307.g ID=Lus10004307.BGIv1.0 annot-version=v1.0 ATGGACATCGGGAATAACCAAATCTCAGGTCCTTTCCCTTGTCTTGAAGGACTCAAATCCAGTTTGCGTGCCATGATTCTTAGGAACAACCTCTTCTTAG GGGGTATTCAATGTTCATATGATGATCAAACTACTTGGCAACAACTCCAAATTGTCGACCTTGCTTTCAACCATTTTTCTGGCCCCTTAGAGTACATAGC TTCATGGGAATTGACGATGGAAGATGGAAATGCGGCAACACAAGATCTCATCAAATTTGAGTCCTCCTTTGGTGGCTATTATCAAGATTCCATAGTCGTG AGCAAGGGTGCTGTTGAATTGGAATTTGTGAAGGTCTTGACAGTATTCAAGTCTATTGATATATCGAGCAACAATTTTGATAGACCAATACCAGAAATCA TATGA
AA sequence Show only first row Show all	>Lus10004307 pacid=23163589 polypeptide=Lus10004307 locus=Lus10004307.g ID=Lus10004307.BGIv1.0 annot-version=v1.0 MDIGNNQISGPFPCLEGLKSSLRAMILRNNLFLGGIQCSYDDQTTWQQLQIVDLAFNHFSGPLEYIASWELTMEDGNAATQDLIKFESSFGGYYQDSIVV SKGAVELEFVKVLTVFKSIDISSNNFDRPIPEII

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Lus10004307 [exp]	0	1
AT1G68630			PLAC8 family protein (.1)		Lus10009036 [exp]	4.6	0.8691
AT1G62935			unknown protein		Lus10009297 [exp]	6.3	0.8680
					Lus10002237 [exp]	7.3	0.8627
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	9.2	0.8507
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10013116 [exp]	10.5	0.7605
AT1G80600		WIN1	HOPW1-1-interacting 1 (.1)		Lus10008025 [exp]	10.7	0.7214
AT3G26880			Plant self-incompatibility pro...		Lus10038164 [exp]	14.0	0.8267
AT4G13990			Exostosin family protein (.1)		Lus10005492 [exp]	14.1	0.8566
AT4G24700			unknown protein		Lus10017951 [exp]	18.2	0.8175
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10010765 [exp]	19.6	0.8195

Compare expression of checked genes

Lus10004307 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.