Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019211 [exp] 362 / 6e-124 ND / Lus10004306 [exp] 303 / 3e-101 ND / Lus10016424 [exp] 252 / 3e-79 ND / Lus10019212 [exp] 228 / 1e-69 ND / Lus10004305 [exp] 230 / 2e-69 ND / Lus10019691 [exp] 208 / 2e-62 ND / Lus10000478 [exp] 205 / 4e-60 ND 41 / 0.004 Lus10000479 [exp] 204 / 6e-60 ND / Lus10019690 [exp] 199 / 5e-59 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004308 pacid=23163592 polypeptide=Lus10004308 locus=Lus10004308.g ID=Lus10004308.BGIv1.0 annot-version=v1.0 ATGGCTCCCTTTGATTTCAAGTTGGAAAACCATTTTGTTGGTTCCACTGATGGAACTTCCCTCCAAGTCTACGAGTTAATTACCAAATCTTCCACCAACT TCTCTTCCATCAAGAAGACTGATTGGAAGAGAGTTGCCACCATTCCGAAACAAGACGATGTTGATGATCATCATGATGATGCATCATCATATGACGGGCT TCTGTTCTTCGATGGTCATGGAAGAATTGAGGAACCAGAAGCCCTGACCATGCTCGCCCAGCACCTGAATCAGCCACGGTTGCTAGTGAATCCAGAAGGG TATTGTTTCTTACAAATATCCGAGTTTGGTGTTCACTACCTTCGACTGAACGATCTGTTCAACTGGCCTCACTACGGGGTCTCACTCGTGACGATCAACC CGTGGAGCAGGTTGGAGCTGAAGTTGTTGTTGAAAGACGATGGCCATGAAGAATGGGAAAAGCTGAGGAAGGAGAAGGATGAGGTGGCACATCTGAAGAA AGAATTGGAGGAATGTCAAAGGAATTCGTGGGCGATTCTACCCTCCACTAAGTTCATACCGCAAAGCTTAGATGCCAAAGATATGTATCTGGCCACGAGA CAGAGGGTCCCACCGGGAATATTCTCGTGTCGTGGTCAATTACCGACCAAGTACGTGAGTAACTCCCAAAAACTGGCGGACGGAATGTCAGTTACCGGAC TATGGGATGTTAGGTTGGTTGACGAGGAAACAAGTACAGCGGGTTCCGCTGAATGGCCACCCCTACCGACAATCAAGGTATTTGTCGGTAGGGACGGTGC GGAATTCGACAAGGACAACTGGTGGTATTTGAAAACGACCCATCCAGAAGGTGGCTTGACTATGCTCGTCTACTACGAAGGAAATCGTTCTCGGATTTCT GTAGCTCGTTCCGTCGGAAGCATCGTTCCGTTGCCGTTTTCTAAGGATCTTGAGGTTTTCTCGTCGGAACATACCTTGTCCTTATTTTTGCTGTACCCAT TTGGGGTGAGATTGGGTTTCGCGTACCGACCAAGATAG
AA sequence Show only first row Show all	>Lus10004308 pacid=23163592 polypeptide=Lus10004308 locus=Lus10004308.g ID=Lus10004308.BGIv1.0 annot-version=v1.0 MAPFDFKLENHFVGSTDGTSLQVYELITKSSTNFSSIKKTDWKRVATIPKQDDVDDHHDDASSYDGLLFFDGHGRIEEPEALTMLAQHLNQPRLLVNPEG YCFLQISEFGVHYLRLNDLFNWPHYGVSLVTINPWSRLELKLLLKDDGHEEWEKLRKEKDEVAHLKKELEECQRNSWAILPSTKFIPQSLDAKDMYLATR QRVPPGIFSCRGQLPTKYVSNSQKLADGMSVTGLWDVRLVDEETSTAGSAEWPPLPTIKVFVGRDGAEFDKDNWWYLKTTHPEGGLTMLVYYEGNRSRIS VARSVGSIVPLPFSKDLEVFSSEHTLSLFLLYPFGVRLGFAYRPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10004308 [exp]	0	1
AT5G51310			2-oxoglutarate (2OG) and Fe(II...		Lus10009025 [exp]	3.2	0.8840
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10003540 [exp]	4.2	0.8363
AT4G33590			unknown protein		Lus10001351 [exp]	5.5	0.8448
					Lus10025106 [exp]	8.4	0.8237
AT5G44390			FAD-binding Berberine family p...		Lus10026775 [exp]	10.2	0.8599
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10023890 [exp]	11.5	0.8076
					Lus10025590 [exp]	12.2	0.7791
AT2G39040			Peroxidase superfamily protein...		Lus10021956 [exp]	16.0	0.8142
AT2G23630		SKS16	SKU5 similar 16 (.1)		Lus10000837 [exp]	16.6	0.8656
AT1G50720			Stigma-specific Stig1 family p...		Lus10011117 [exp]	20.6	0.8488

Compare expression of checked genes

Lus10004308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.