Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47890 211 / 4e-61 AtRLP7 receptor like protein 7 (.1) AT2G33020 199 / 3e-57 AtRLP24 receptor like protein 24 (.1) AT3G05660 197 / 1e-56 AtRLP33 receptor like protein 33 (.1) AT5G25910 196 / 5e-56 AtRLP52 receptor like protein 52 (.1) AT3G05650 194 / 3e-55 AtRLP32 receptor like protein 32 (.1) AT2G15042 189 / 4e-55 Leucine-rich repeat (LRR) family protein (.1) AT2G33050 192 / 6e-55 AtRLP26 receptor like protein 26 (.1) AT2G32680 193 / 7e-55 AtRLP23 receptor like protein 23 (.1) AT2G32660 189 / 7e-55 AtRLP22 receptor like protein 22 (.1) AT4G13880 187 / 4e-53 AtRLP48 receptor like protein 48 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004310 [exp] 450 / 1e-152 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10016402 [exp] 431 / 5e-147 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10004313 [exp] 434 / 6e-147 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10042239 [exp] 439 / 1e-145 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 435 / 2e-144 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10006825 [exp] 413 / 6e-136 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10019693 [exp] 387 / 1e-130 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10003389 [exp] 372 / 3e-120 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10002214 [exp] 333 / 7e-111 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 320 / 1e-102 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G120600 [exp] 307 / 2e-95 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.011G021216 [exp] 231 / 8e-73 AT3G05660 256 / 1e-77 receptor like protein 33 (.1) Potri.001G389100 [exp] 228 / 3e-67 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.001G128400 [exp] 227 / 1e-66 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G127000 [exp] 221 / 8e-65 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G126900 [exp] 218 / 2e-63 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.012G028500 [exp] 218 / 3e-63 AT1G45616 371 / 6e-112 receptor like protein 6 (.1) Potri.016G127101 [exp] 216 / 6e-63 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.012G025400 [exp] 216 / 1e-62 AT1G45616 399 / 7e-122 receptor like protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10004309 pacid=23163602 polypeptide=Lus10004309 locus=Lus10004309.g ID=Lus10004309.BGIv1.0 annot-version=v1.0 ATGCTTAGCGGCAACATACCCAATACATTCCAAAATTCGTGTGCTTTACAAACTCTATTTCTCAGTAACAACCGGTTACAAGGGAAAATTCCAAAGTCCT TGACGAACTGCACAAAGTTGGAAGTTTTAGACATCGGAAACAACAAAATTTCAGACGTTTTCCCATGTGTTGGAGGTATCAAATCCACTCTGCGCGTCCT GATTCTTAGGAACAATAGCTTTTATGGGAGTATTCAGTGCTCATATGATGATCCAACTACTTGGCAACAACTTCAAATTGTCGATCTTGCTTTCAACAAT TTTTCTGGCCCCTTGAATTCCAAGTTCTTAGCTACATGGGAAGCAATGATGGAAGGTGGAAAGAAAACATATGATCCCATCCAATTTTGGACCTCTTCAT CACTTGGGTACTATAGAGATTCCATAACTGTCAGCAGCAAGGGCCTTGAATTGAAACTTGAGAATATCTTAACAATATTCAAGTCTATTGATTTGTCAAG CAACAATCTTGACGGGCCAATACCGGAAGTCGTAGGCGAACTCGAAGCACTTGAGGTTCTCAACTTCTCTCACAATGCTTTCACTCGAAATATCCCATCG ACAATCGGCAACTTGTCAAACTTGGAGTCTCTAGATCTTTCTCATAACAAGCTTGGTGGACATATCCCGGCGCAGTTAGCAGGCTTGACATTCCTTGCAG TCATGAACCTGTCAGATAACTATCTAGTTGGATGCATCCCAACAGGCAGTCAGTTCCAAACATTTGAGAACTCTTCATATAGAGGCAATCCAGACTTATG CGGTTGGCCACTGACCAAATCTTGCACTCCAATTCTTCCGTCGGTGTTCAATGTCAGACATGAGAGATCTTACACAACAATTAACTGGGACTTTCTAAGC AAAGCATTCGGATATGTTTCCGGCTTAGGTGTTATCATGTTGCCAGCTGCGTTATGGCCAGGTTTTAGAGTCTGGTACTGGCCGAAGATCGATTCTCTAA TCCTTTGGATGTTCCCAAAGTTATATGTGAAAGACTGGAACAATCGTCTAAGGCAAACGAGAAGGCGACGAGGGAGGACACAATGA
AA sequence Show only first row Show all	>Lus10004309 pacid=23163602 polypeptide=Lus10004309 locus=Lus10004309.g ID=Lus10004309.BGIv1.0 annot-version=v1.0 MLSGNIPNTFQNSCALQTLFLSNNRLQGKIPKSLTNCTKLEVLDIGNNKISDVFPCVGGIKSTLRVLILRNNSFYGSIQCSYDDPTTWQQLQIVDLAFNN FSGPLNSKFLATWEAMMEGGKKTYDPIQFWTSSSLGYYRDSITVSSKGLELKLENILTIFKSIDLSSNNLDGPIPEVVGELEALEVLNFSHNAFTRNIPS TIGNLSNLESLDLSHNKLGGHIPAQLAGLTFLAVMNLSDNYLVGCIPTGSQFQTFENSSYRGNPDLCGWPLTKSCTPILPSVFNVRHERSYTTINWDFLS KAFGYVSGLGVIMLPAALWPGFRVWYWPKIDSLILWMFPKLYVKDWNNRLRQTRRRRGRTQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Lus10004309 [exp]	0	1
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10012448 [exp]	1.0	0.8719
AT2G26695			Ran BP2/NZF zinc finger-like s...		Lus10033023 [exp]	3.5	0.8478
AT4G24190		AtHsp90-7, HSP9...	SHEPHERD, HEAT SHOCK PROTEIN 9...		Lus10035109 [exp]	4.0	0.8656
AT5G20990		B73, CNX1, SIR4...	SIRTINOL 4, CO-FACTOR FOR NITR...		Lus10000717 [exp]	4.9	0.8295
AT1G68490			unknown protein		Lus10027557 [exp]	5.7	0.8516
AT5G14610			DEAD box RNA helicase family p...		Lus10035149 [exp]	7.0	0.8216
					Lus10008005 [exp]	7.2	0.7870
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10018228 [exp]	9.6	0.7447
AT2G36960	MYB	TKI1	TSL-kinase interacting protein...		Lus10010230 [exp]	9.7	0.8403
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10027030 [exp]	9.9	0.8042

Compare expression of checked genes

Lus10004309 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.