Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33050 290 / 8e-86 AtRLP26 receptor like protein 26 (.1) AT4G13880 287 / 2e-85 AtRLP48 receptor like protein 48 (.1) AT2G33060 288 / 4e-85 AtRLP27 receptor like protein 27 (.1) AT3G05660 286 / 1e-83 AtRLP33 receptor like protein 33 (.1) AT4G13810 270 / 5e-79 AtRLP47 receptor like protein 47 (.1.2) AT3G05650 272 / 1e-78 AtRLP32 receptor like protein 32 (.1) AT1G45616 274 / 2e-78 AtRLP6 receptor like protein 6 (.1) AT3G05370 271 / 2e-78 AtRLP31 receptor like protein 31 (.1) AT1G71400 268 / 3e-77 AtRLP12 receptor like protein 12 (.1) AT1G47890 270 / 6e-77 AtRLP7 receptor like protein 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004313 [exp] 853 / 0 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10006825 [exp] 745 / 0 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10026415 [exp] 669 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10042239 [exp] 663 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10016402 [exp] 587 / 0 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10003389 [exp] 577 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10019693 [exp] 571 / 0 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10004309 [exp] 465 / 6e-158 AT1G47890 225 / 6e-66 receptor like protein 7 (.1) Lus10002214 [exp] 405 / 2e-132 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 488 / 5e-161 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G120600 [exp] 479 / 1e-153 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 367 / 6e-112 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.001G389100 [exp] 340 / 1e-102 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.016G126900 [exp] 333 / 4e-100 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.012G027600 [exp] 331 / 3e-98 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.016G127000 [exp] 319 / 6e-95 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.011G021400 [exp] 317 / 4e-94 AT3G11080 375 / 2e-114 receptor like protein 35 (.1) Potri.001G437700 [exp] 316 / 9e-94 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.016G127101 [exp] 314 / 4e-93 AT1G47890 580 / 0.0 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004310 pacid=23163591 polypeptide=Lus10004310 locus=Lus10004310.g ID=Lus10004310.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCACAACTCTCCCCAATGAAACTTTACTCATTCATCACTTGGTTATTGATATCTCTTCTACCCATTGTAATGGGAAACCACCCTGTTCCCA TGGTCGATGGCCGATGCCGAAAAGATCAACAATCCCTACTCCTACAACTCAAATATGGCCTCAAATTCAACCATTCGTCATCGGAAAAGATGGTTGCGTG GAATTCGAGTATCGACTGCTGTGAGTGGCCTGGTGTAAGATGTGATCTTGGTGGCCTTGGCCGTGTTGTTGGACTCGACTTTAGCCGGGAATCGATCACC GGAGGAGGTGGACTCCACGATTCCACCGCTCTCTTTAGTCTTCAGTATCTTGAGGTACTGAATTTGGGTTACAATCGATTCAACACAACTATTCCAGCTG CACTTGCCAACCTCACCAATCTGAGGTATCTGGATTTACAAGATGCTTACTTCTATGGCCAAATTCCTACTCAATGGGAAAGTATTCACAAACTTACCAA TATAGACCTCAGCCACAATTTCCTCAATGGGAGTATCCCACCATCTTTATTTTCCATTCCATCATTAGAACACATTAACCTATCCTCTAACCAGCTTCAA TGTCAAGTTCCAGAGTTTTCAAGTAATTCTTCTTCGATTATGGAATCTATAGATTTGAGAAACAACCATCTAGAAGGTCTCATCCCTCGTTCATTTTTCG AACTTCCCTCACTTAGAGACCTCTGGCTTTCGTCTAACAGATTCAGTGGAAGGGTCGAGTTAAGTTGGTTTCAGACACTCCAAAATCTCGTAACCCTTGA TCTTTCTTACAACAACTTAACAGTGGATGCAAGTATGATCAACAAATCTTCTACTTCTCCAATCTTTCCTCATTTAGACACGTTGAATCTGGTATCGTGC AATCTTATAAGATTCCCTGAGTTAGGCAACCAATTGAAGCTAACTCAACTAGACCTTTCTGACAACCATATCAACGGGGTAGTACCCCGTTGGATCATGG AGTCTTCTTCTCTACAACTTCTCAATCTTTCACATAACAACCTAGTGAGTTTTGAGGTACAATCTTTGTCTAGTTCTCCTCAATATTTGGATATGCATGA CAACCAACTCCAAGGAAATTTTCCTTCCATCCTATCATCATCATTCTCAACAGCCTACATGGACTTCTCCCACAATCATTTCAATGGCTTCATTCCGGCC GGAATTTTTCATAACCACCACCTATACTTTCTTTCACTCTCAAATAATAGCTTCCTAGGAACCATTCCGACAATGGTTTGCAATCTTGCATACCTTCAAG TCCTTGATTTTTCAAACAACCATTTGAATGACATAATTCCATCTTGTCTCATGAAATCCATGAAAAATCTTTCTGTTCTAGACTTGAAAGGAAATATGTT CAGTGGCGACATACCCGACACATTCCAAGCTTCATGTGCTTTACAAACTCTAAATCTCAATAACAACCGGTTAGAAGGAACACTTCCAGTGTCTTTAGAG AAATGCACAAAATTGGAAGTTTTAGACATCGGAAACAACAAAATCTCGGGTCCTTTTCCTTGTCTTCAAGGACTCAAACCTAGTTTGCGTGTCCTAATTC TAAGGAACAACCTCTTTTCTGGGGGCATCCAGTGTTCATATGCTGATCAAACTACTTGGCAACAACTTCAAATTATCGATCTTGCCTTAAACAATTTTTC CGGCCCCTTAAACGCCAAGTACTTAGCTTCGTGGGAAGCGATGATGGACGATGGAAAGGGAACACAAGATCTTATCGACTTTCGGCCCTCCCCATCATCA CGTGGCTATTATCAAGATTCCATAGATGTGACCACCAAGGGTAACGAACGGAAATTTGTGAAGGTCTTGAAGATATTCAAGTCAATTGATATGTCGAGCA ATAATTTTGACGGGACAATACCAAAAGTTATAGGACAATTCAAAGCACTACAGGTTCTCAACTTATCCCACAATGCTTTTATTAGCCGGATTCCATCAGG GATTGGCAACTTGTCAAGCTTGGAGTCCCTAGACCTCTCTCATAACACGCTTAGTGGACATATACCAAATGAACTAGCGGACTTGACATTCCTTTCATTT TTGAACCTATCAAATAACCATTTACTCGGCAGTATCCCTGCTGGCAGACAATTACAAACGTTCGAGAACACTTCATATGGAGGTAACCCAAAATTGTGCG GGAAACCTTTGACTAGATCCTGCACTTTGCCGAATGTTTCATTTGAGTTCAATGTCGACCATGAAAAATCATTCACACGAGTCAACTGGGACTTTCTATG CGAAGCATCCGGATATGTCTTTGGGTTAGCTGCTGTCATGTTGCCAGCCGCGTGTTGGCCAAGTTTTCGAGTTTGGTTCTGGCTGAAGATCGACTCTCTA ATCATTTGGATGTTCGCTGAGTTATACGTGAAAGACTGGAATAATCGTCTTAGGCGAAGTCAGAGCCGACGCCATACCAAAAGGATTGTGCCAAGCCGGT AA
AA sequence Show only first row Show all	>Lus10004310 pacid=23163591 polypeptide=Lus10004310 locus=Lus10004310.g ID=Lus10004310.BGIv1.0 annot-version=v1.0 MASSQLSPMKLYSFITWLLISLLPIVMGNHPVPMVDGRCRKDQQSLLLQLKYGLKFNHSSSEKMVAWNSSIDCCEWPGVRCDLGGLGRVVGLDFSRESIT GGGGLHDSTALFSLQYLEVLNLGYNRFNTTIPAALANLTNLRYLDLQDAYFYGQIPTQWESIHKLTNIDLSHNFLNGSIPPSLFSIPSLEHINLSSNQLQ CQVPEFSSNSSSIMESIDLRNNHLEGLIPRSFFELPSLRDLWLSSNRFSGRVELSWFQTLQNLVTLDLSYNNLTVDASMINKSSTSPIFPHLDTLNLVSC NLIRFPELGNQLKLTQLDLSDNHINGVVPRWIMESSSLQLLNLSHNNLVSFEVQSLSSSPQYLDMHDNQLQGNFPSILSSSFSTAYMDFSHNHFNGFIPA GIFHNHHLYFLSLSNNSFLGTIPTMVCNLAYLQVLDFSNNHLNDIIPSCLMKSMKNLSVLDLKGNMFSGDIPDTFQASCALQTLNLNNNRLEGTLPVSLE KCTKLEVLDIGNNKISGPFPCLQGLKPSLRVLILRNNLFSGGIQCSYADQTTWQQLQIIDLALNNFSGPLNAKYLASWEAMMDDGKGTQDLIDFRPSPSS RGYYQDSIDVTTKGNERKFVKVLKIFKSIDMSSNNFDGTIPKVIGQFKALQVLNLSHNAFISRIPSGIGNLSSLESLDLSHNTLSGHIPNELADLTFLSF LNLSNNHLLGSIPAGRQLQTFENTSYGGNPKLCGKPLTRSCTLPNVSFEFNVDHEKSFTRVNWDFLCEASGYVFGLAAVMLPAACWPSFRVWFWLKIDSL IIWMFAELYVKDWNNRLRRSQSRRHTKRIVPSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004310 [exp]	0	1
					Lus10026713 [exp]	5.5	0.8655
					Lus10021851 [exp]	7.7	0.8655
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	9.5	0.8655
					Lus10008791 [exp]	11.0	0.8655
					Lus10012440 [exp]	12.2	0.8655
					Lus10031183 [exp]	13.4	0.8575
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	14.1	0.8573
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	14.5	0.8573
					Lus10020451 [exp]	17.0	0.8569
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	17.9	0.8497

Compare expression of checked genes

Lus10004310 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.