Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71390 303 / 2e-91 AtRLP11 receptor like protein 11 (.1) AT4G13880 297 / 2e-89 AtRLP48 receptor like protein 48 (.1) AT4G13810 295 / 1e-88 AtRLP47 receptor like protein 47 (.1.2) AT2G32660 287 / 5e-87 AtRLP22 receptor like protein 22 (.1) AT1G71400 293 / 6e-87 AtRLP12 receptor like protein 12 (.1) AT3G05650 293 / 1e-86 AtRLP32 receptor like protein 32 (.1) AT2G33060 289 / 9e-86 AtRLP27 receptor like protein 27 (.1) AT3G05660 286 / 3e-84 AtRLP33 receptor like protein 33 (.1) AT3G05360 284 / 4e-84 AtRLP30 receptor like protein 30 (.1) AT3G28890 281 / 7e-84 AtRLP43 receptor like protein 43 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006825 [exp] 976 / 0 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10004310 [exp] 918 / 0 AT2G33060 358 / 6e-111 receptor like protein 27 (.1) Lus10042239 [exp] 647 / 0 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 640 / 0 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10016402 [exp] 613 / 0 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10019693 [exp] 602 / 0 AT2G33050 295 / 1e-91 receptor like protein 26 (.1) Lus10003389 [exp] 571 / 0 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10004309 [exp] 474 / 5e-162 AT1G47890 225 / 6e-66 receptor like protein 7 (.1) Lus10002214 [exp] 437 / 4e-145 AT3G05660 293 / 2e-89 receptor like protein 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G120532 [exp] 507 / 6e-169 AT1G45616 325 / 9e-98 receptor like protein 6 (.1) Potri.016G120600 [exp] 488 / 9e-158 AT1G47890 441 / 7e-137 receptor like protein 7 (.1) Potri.001G128400 [exp] 410 / 8e-129 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G126900 [exp] 340 / 4e-103 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.001G389100 [exp] 339 / 1e-102 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.012G027600 [exp] 325 / 2e-96 AT1G71400 395 / 1e-121 receptor like protein 12 (.1) Potri.001G437700 [exp] 322 / 2e-96 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.012G009400 [exp] 318 / 3e-96 AT2G33060 414 / 3e-132 receptor like protein 27 (.1) Potri.011G104600 [exp] 323 / 2e-95 AT2G15080 421 / 5e-129 receptor like protein 19 (.1.2) Potri.016G127000 [exp] 319 / 3e-95 AT1G47890 588 / 0.0 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10004313 pacid=23163619 polypeptide=Lus10004313 locus=Lus10004313.g ID=Lus10004313.BGIv1.0 annot-version=v1.0 ATGGGCAGCGACCATGTTCTTTCGGTCGATGGCCGCTGCCGAGAAGACCAACAATCCCTACTCTTACAATTCAAACATTGTCTCAACTTAAGCAAAAGTA TAGGCTCAGAAAATCGACTGGTTGAGTGGAATTCGAGCACGGATTGCTGTGAGTGGCCTGGTATAAAATGTGATCTCAATGGCCTTGGTCGTGTTGTCGT ACTCGACTTGAGCTTTGAACAGATAATTGTAGGAGGTGGAATCGACGATTCTTCGGCTCTGTTTAGTCTTGGATATCTCGAGGAACTGGATCTGTCCCAC AACTTCTTCAACACAACTATTCCAGGTGCACTTGGCAACCTCATCAATTTGAGGTATCTAGACTTATCCGATGCTGGTTTCTATGGTCAAATTCCAGAGT TTTCAGCTAATACTTCTTCGACTCTGAATTCTATATACTTGTATAACAATTTTCTCCACGGAAGCATCCCACCATCTTTATTTTCCATTCCGTCATTGAA CGATCTTGATCTGTCCGATAACCAACTAGTAGGTCCCATCCCCCATTCAATTTTTGAACTTTCATCATTTTATTTCCTCGACCTTTCATTTAATAAATTG AGTGGAAGGGTCCAGTTAAGTTGGTTTCAAACACTCCAAAAACTCACTTCCCTTGATCTTTCCTACAACAACCTTACAATTGATGCAACTATCAATAAAT CCTCTACGAGCTCGCCCATCTTTCCTCAATTAAAAGTATTGCATCTTGCAACGTGTAATTTGAGAACAATTCCCGAGTTGGGCAACCAACTAAGTCTTTA TAACTTAGACCTTTCTGACAACAATATCAATGGGGTAATACCTCGTTGGATTATGAATTCGACTATTCTATACTATCTCAATCTTTCACACAACAACCTA GTAGGTTTTGAGGTCCAACATTTTGCTTCTACTCCTCAAATTTTGGACATGCATGACAACCAACTCCAAGGAAACTTTCCATTCATTCCATTTTCATTAC TATCATCCTACAAAGGGTACATAGATTTCTCCCACAATCATTTCAATGGTTCCATTCCAGCCCCAATTTTCAATAACCTTGATTTGGAGTTTCTTTCACT ATCAAATAATAGCTTCACAGGAACCATTCCAACAAGTATGTGTGATGCTGTAAGTCTTGACGTCATTAATCTTTCAAACAACCATTTGAATGGAACAATC CCATCTTGTCTCATAAAAACCATGAAATATCTCTCTGTCCTAGATTTGAGTGGGAATATGTTTACTGGCAACATACCAAACACATTCCATACTTCATGTG CTTTACAAACTCTAAATTTTCATAACAACCAATTACAAGGAACATTTCCAACGTCCTTGGAGAATTGCACGAAGTTGGAAGTTTTAGACATCGGGAACAA CAAAATTGCAGGTCATTTCCCTTGTCTTCAAGGAGTAATCAAATCTACTTTGCGTGTCCTAATTCTTAGGAACAACCTCTTTCATGGGAGCATTCAGTGC TCGTATGATGATCAAACTACTTGGCAACAACTCCAAATTGTCGATCTTGCTTCCAACAATTTTTCGGGACCCTTAAATGCCAAATACTTAGATTCATTGA AAGTCATGATGGAAGATGAAAAGGGTACACAGCTTATTAAATTTGGGGATCTCAGTTCAGCAAGTGGCTATTATCAAGATTCCATAATCGTGAGCAACAA GGGTCTCGAATTGGAGTTTGTAAAAGTCTTGACAATATTCAAGGCTATTGATTTGTCAAGCAACAATTTTGACGGGCCAATACAAGAAGTTATAGGAAAA TTCAAAGCACTCAAGGTGCTTAACTTATCTCACAATGGGTTTGTTAGCCAGATCCCATCGACGTTCGGCAACTTGTCAAGTTTAGAATCTCTAGACCTCT CACATAACATGCTCAGTGGACATATACCAAAGGAACTAGCGGACTTGACGTTCCTTTCATGCCTAAACCTATCAAATAACCATTTAGTTGGCAGCATCCC AACCGGCAGACAGTTTGCTACGTTCGAGAACACTTCGTATGGAGGTAATCCAAAACTGTGTGGGAAACCTTTGACTGGATCCTGCACTTCACCACCACCT CCGCCGGATATCATTATTAGCCGTCAGAAATCAAATGGAGGAACCGACTGGGACAAGCTTAGCAAAGCAATTGGATATGTGTTTGGCCTAAGTGTTGTCA TGTTGCCAGCTACGTTATGGCCAAGTTTTCGTATTTGGTTCTGGCCGAAAATCGATTCTCTAATCCTTTGGATGTTCCCAAAGTTATATGTGAAAGACTG GAATAATCGTTTCAGGCAAACGAGAAGAAGAAGAAGAAGACAATGTAGCAGACAGTAA
AA sequence Show only first row Show all	>Lus10004313 pacid=23163619 polypeptide=Lus10004313 locus=Lus10004313.g ID=Lus10004313.BGIv1.0 annot-version=v1.0 MGSDHVLSVDGRCREDQQSLLLQFKHCLNLSKSIGSENRLVEWNSSTDCCEWPGIKCDLNGLGRVVVLDLSFEQIIVGGGIDDSSALFSLGYLEELDLSH NFFNTTIPGALGNLINLRYLDLSDAGFYGQIPEFSANTSSTLNSIYLYNNFLHGSIPPSLFSIPSLNDLDLSDNQLVGPIPHSIFELSSFYFLDLSFNKL SGRVQLSWFQTLQKLTSLDLSYNNLTIDATINKSSTSSPIFPQLKVLHLATCNLRTIPELGNQLSLYNLDLSDNNINGVIPRWIMNSTILYYLNLSHNNL VGFEVQHFASTPQILDMHDNQLQGNFPFIPFSLLSSYKGYIDFSHNHFNGSIPAPIFNNLDLEFLSLSNNSFTGTIPTSMCDAVSLDVINLSNNHLNGTI PSCLIKTMKYLSVLDLSGNMFTGNIPNTFHTSCALQTLNFHNNQLQGTFPTSLENCTKLEVLDIGNNKIAGHFPCLQGVIKSTLRVLILRNNLFHGSIQC SYDDQTTWQQLQIVDLASNNFSGPLNAKYLDSLKVMMEDEKGTQLIKFGDLSSASGYYQDSIIVSNKGLELEFVKVLTIFKAIDLSSNNFDGPIQEVIGK FKALKVLNLSHNGFVSQIPSTFGNLSSLESLDLSHNMLSGHIPKELADLTFLSCLNLSNNHLVGSIPTGRQFATFENTSYGGNPKLCGKPLTGSCTSPPP PPDIIISRQKSNGGTDWDKLSKAIGYVFGLSVVMLPATLWPSFRIWFWPKIDSLILWMFPKLYVKDWNNRFRQTRRRRRRQCSRQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	0	1
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	1.7	0.9455
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Lus10039263 [exp]	3.5	0.9043
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10030684 [exp]	3.9	0.9303
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	6.2	0.9452
AT5G20860			Plant invertase/pectin methyle...		Lus10033621 [exp]	6.3	0.9378
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10007217 [exp]	7.2	0.8784
AT5G45840			Leucine-rich repeat protein ki...		Lus10015277 [exp]	7.3	0.9292
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	8.0	0.9144
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	8.5	0.9409
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10032615 [exp]	10.6	0.9012

Compare expression of checked genes

Lus10004313 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.