Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04340 128 / 5e-36 C2H2ZnF ZAT6, CZF2, C2H2 COLD INDUCED ZINC FINGER PROTEIN 2, zinc finger of Arabidopsis thaliana 6 (.1) AT1G27730 127 / 6e-36 C2H2ZnF ZAT10, STZ salt tolerance zinc finger (.1) AT5G67450 119 / 1e-32 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT3G19580 119 / 2e-32 C2H2ZnF AZF2 zinc-finger protein 2 (.1.2) AT3G49930 117 / 3e-32 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43170 103 / 3e-27 C2H2ZnF AZF3 zinc-finger protein 3 (.1) AT2G45120 84 / 1e-18 C2H2ZnF C2H2-like zinc finger protein (.1) AT3G60580 82 / 3e-18 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G28200 82 / 4e-18 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G56200 81 / 3e-17 C2H2ZnF C2H2 type zinc finger transcription factor family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032848 [exp] 388 / 7e-138 AT1G27730 149 / 1e-43 salt tolerance zinc finger (.1) Lus10033798 [exp] 128 / 6e-36 AT1G27730 146 / 3e-43 salt tolerance zinc finger (.1) Lus10014631 [exp] 122 / 3e-33 AT1G27730 144 / 4e-42 salt tolerance zinc finger (.1) Lus10018696 [exp] 115 / 2e-31 AT3G49930 130 / 6e-38 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10028173 [exp] 77 / 4e-16 AT1G02040 124 / 4e-32 C2H2-type zinc finger family protein (.1) Lus10042872 [exp] 77 / 8e-16 AT2G45120 124 / 7e-32 C2H2-like zinc finger protein (.1) Lus10009775 [exp] 75 / 4e-15 AT1G02030 128 / 5e-33 C2H2-like zinc finger protein (.1) Lus10009278 [exp] 73 / 4e-15 AT2G45120 161 / 2e-48 C2H2-like zinc finger protein (.1) Lus10024763 [exp] 70 / 1e-13 AT1G02030 122 / 9e-31 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G017300 [exp] 178 / 2e-55 AT1G27730 189 / 4e-60 salt tolerance zinc finger (.1) Potri.002G119300 [exp] 168 / 1e-51 AT1G27730 186 / 8e-59 salt tolerance zinc finger (.1) Potri.001G295500 [exp] 152 / 2e-45 AT1G27730 144 / 2e-42 salt tolerance zinc finger (.1) Potri.009G089400 [exp] 135 / 1e-38 AT3G19580 120 / 6e-33 zinc-finger protein 2 (.1.2) Potri.014G066200 [exp] 74 / 9e-15 AT1G02040 129 / 1e-33 C2H2-type zinc finger family protein (.1) Potri.002G143800 [exp] 72 / 2e-14 AT3G60580 199 / 1e-61 C2H2-like zinc finger protein (.1) Potri.002G143600 [exp] 71 / 8e-14 AT1G02040 124 / 1e-31 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 68 / 8e-14 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.014G066100 [exp] 70 / 1e-13 AT3G60580 176 / 1e-52 C2H2-like zinc finger protein (.1) Potri.009G027700 [exp] 65 / 2e-12 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10004316 pacid=23151901 polypeptide=Lus10004316 locus=Lus10004316.g ID=Lus10004316.BGIv1.0 annot-version=v1.0 ATGGAAGCTCTCCCCTCCCCAACATCTGCCACACTACTTCCTTCCTTCCAATTCCAGGAATTCAATCTCAACCCACTGGCCAAGCGCAAGCGCTCCAAGC GATCCTCCCAACACAACCCACCAACAGAGGAAGAATACCTCGCTCTCTGCCTCCTAATGCTTGCTCGCGGCAGCTTCTCCAGCCCCAATTTTCACTTTTC TAATCCTCCTCGCTCCACCTCCCCGCCAATCGCCACCTCCTACCAGTACCATAATCTTTCTTCAAGCTTCAACTGTGTTGTCTGCAGTAAGTCTTTCTCC TCTTACCAAGCCTTAGGCGGCCACAAGGCTAGCCATCGAAAATCGGCTCTGGTGGATCAACAACCCCTCCCACCCACTTCCACTACTACTACTATTGCTA CCCTCACCAACTCCACTATGAACGATAAGGCTCACGAGTGCTCTATATGCCATAAGAGTTTCCCCACCGGACAAGCTCTTGGCGGTCCCAAGCGCTGCCA CTACGACAGCGCCGCGGACAAGAGCAGAGTAATTATCGCTTCTACTTCCGGCACTGGATCCGAGCGCGTTGGGTCAACGACCACCAACAGTAGCGGTAGT CGGATGATGCAAAGCCACCGCCGCAGATTAATCGACCTCAACCTCCCTGCGCTGCCGCAACTTGCAGGAGATGAAGAGGTCACGAGCCCCTTGCCCACTA TTTCCAAGAAGCACAGGCTCACTCTTATGCTGCTCATGCCTACCAACACGGCAGCAAAAGCGCACTAA
AA sequence Show only first row Show all	>Lus10004316 pacid=23151901 polypeptide=Lus10004316 locus=Lus10004316.g ID=Lus10004316.BGIv1.0 annot-version=v1.0 MEALPSPTSATLLPSFQFQEFNLNPLAKRKRSKRSSQHNPPTEEEYLALCLLMLARGSFSSPNFHFSNPPRSTSPPIATSYQYHNLSSSFNCVVCSKSFS SYQALGGHKASHRKSALVDQQPLPPTSTTTTIATLTNSTMNDKAHECSICHKSFPTGQALGGPKRCHYDSAADKSRVIIASTSGTGSERVGSTTTNSSGS RMMQSHRRRLIDLNLPALPQLAGDEEVTSPLPTISKKHRLTLMLLMPTNTAAKAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04340	C2H2ZnF	ZAT6, CZF2, C2H...	COLD INDUCED ZINC FINGER PROTE...		Lus10004316 [exp]	0	1
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10032848 [exp]	1.4	0.9697
AT3G03280			unknown protein		Lus10013490 [exp]	2.4	0.9591
AT3G49930	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10018696 [exp]	3.9	0.9394
AT4G29780			unknown protein		Lus10027622 [exp]	4.6	0.9468
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	5.5	0.9381
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	6.0	0.9426
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10015897 [exp]	6.7	0.9344
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	7.0	0.9356
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10034885 [exp]	8.9	0.9344
AT4G34320			Protein of unknown function (D...		Lus10011295 [exp]	10.2	0.9347

Compare expression of checked genes

Lus10004316 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.