Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 251 / 3e-81 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G22770 226 / 9e-72 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 185 / 4e-56 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 184 / 1e-54 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 176 / 9e-52 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 158 / 2e-45 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT5G51590 158 / 9e-45 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 140 / 2e-38 AT-hook AT hook motif DNA-binding family protein (.1.2) AT1G63470 134 / 4e-36 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 127 / 9e-34 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004022 [exp] 227 / 1e-71 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 226 / 2e-71 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10031696 [exp] 192 / 5e-58 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10015027 [exp] 189 / 2e-57 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 188 / 5e-57 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10007003 [exp] 167 / 2e-49 AT4G12080 197 / 6e-61 AT-hook motif nuclear-localized protein 1 (.1) Lus10031118 [exp] 164 / 8e-49 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10037858 [exp] 166 / 4e-48 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 164 / 8e-48 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G116500 [exp] 309 / 2e-104 AT4G12080 251 / 2e-81 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G115800 [exp] 308 / 6e-104 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 265 / 6e-87 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 256 / 1e-83 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 207 / 3e-64 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.002G158200 [exp] 172 / 5e-51 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 170 / 4e-50 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 164 / 2e-47 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.001G143500 [exp] 164 / 2e-47 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 162 / 8e-47 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10004318 pacid=23161744 polypeptide=Lus10004318 locus=Lus10004318.g ID=Lus10004318.BGIv1.0 annot-version=v1.0 ATGGAAGTTAGAGAAGCAGTTACTAGTGTTGGTGGGGTTACAGTAGTGGGATCCGATGCTCCGTCCAACTACCATATAGCTCCAAGGACGACAGATCAAC CCACCAACCCCACTCCTCCTGGATCCACGGCGCTTCCACACCCTCATAAAAAGCGAGGCCGGCCAAGGAAGTACCGGCCAGATGGAAGTGCCGCCAAGCC ACTGTCGCCAAAGCCCATCTCCTCTGCAGCTCCGGCACCGCCACCTGTCATCGATTTCTCCGCCGAGAAGCGCCCTAAAGTGGAGCCGGTCGCCAAAAAG TATGAACCGCCGGCCGAGAAATTTGAACATGCACCTGTGGGGGAGTGGGTCTCATGCTCTGTTGGCGCTAATTTTACTCCTCATATCATCACTGTAAATG CTGGCGAGGATGTTACGATGAAGATCATATCCTTCTCTCAACAAGGACCTCGCGCCATATGCATACTTTCTGCAAATGGTATAATCTCCAATGTCACGCT GCGACAGCCTGATTCTTCTGGAGGTACACTAACTTATGAGCTATGGCAGTTGACGGAACAATTTGCTGATTGTTTGGTCTTGAACTGTGCAAAACTGACC TCTTCCTATCGAATTTCATTCGTCCAGGGTCGGTTTGAAATATTATCGTTGTCTGGTTCATTCATGCCTAGTGAAAGCGAAGGAGCAAGGAGCAGAACCG GTGGGATGAGCGTCTCGTTGGCAAGTCCAGATGGACGCGTCGTGGGTGGTGGCATCGCTGGTCTATTAATAGCTGCGAGTCCAGTACAGGTTGTGGTGGG CAGCTTTCTCGCCGGGAACCAGCACGAACAGAATCCAAAGAAGCACAATAAGCACGAACCCTTTACCATCACAACCACATCGGCCACTCATGTATCTATT GCTGATCCAACATCCGCAGTCACATCTTCCTCGTTCCGGGGAGATACTTGGTCTGCGGTCCCAGCAGATTCGAGAAATAATCAAAGCGAGATTAACATGA CTACTGTACATGCAGGATGA
AA sequence Show only first row Show all	>Lus10004318 pacid=23161744 polypeptide=Lus10004318 locus=Lus10004318.g ID=Lus10004318.BGIv1.0 annot-version=v1.0 MEVREAVTSVGGVTVVGSDAPSNYHIAPRTTDQPTNPTPPGSTALPHPHKKRGRPRKYRPDGSAAKPLSPKPISSAAPAPPPVIDFSAEKRPKVEPVAKK YEPPAEKFEHAPVGEWVSCSVGANFTPHIITVNAGEDVTMKIISFSQQGPRAICILSANGIISNVTLRQPDSSGGTLTYELWQLTEQFADCLVLNCAKLT SSYRISFVQGRFEILSLSGSFMPSESEGARSRTGGMSVSLASPDGRVVGGGIAGLLIAASPVQVVVGSFLAGNQHEQNPKKHNKHEPFTITTTSATHVSI ADPTSAVTSSSFRGDTWSAVPADSRNNQSEINMTTVHAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10004318 [exp]	0	1
AT2G36090			F-box family protein (.1)		Lus10017006 [exp]	2.2	0.9237
AT2G39010		PIP2E, PIP2;6	PLASMA MEMBRANE INTRINSIC PROT...		Lus10021475 [exp]	3.0	0.9059
AT1G07630		PLL5	pol-like 5 (.1)		Lus10024397 [exp]	3.5	0.9155
AT5G50300		ATAZG2	ARABIDOPSIS THALIANA AZA-GUANI...		Lus10040894 [exp]	4.5	0.8506
					Lus10025897 [exp]	5.3	0.9013
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Lus10032308 [exp]	6.5	0.8607
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021974 [exp]	7.1	0.8983
AT3G11660		NHL1	NDR1/HIN1-like 1 (.1)		Lus10004202 [exp]	7.5	0.8801
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Lus10022676 [exp]	7.7	0.8668
AT1G35720		ATOXY5, ANNAT1	annexin 1 (.1)		Lus10003611 [exp]	8.8	0.8668

Compare expression of checked genes

Lus10004318 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.